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  5. Solyc01g110020.4.1

Solyc01g110020.4.1 (EBS, Solyc01g110020)


Aliases : EBS, Solyc01g110020

Description : component BAH of BAH-EMF1 Polycomb silencing complex


Gene families : OG0000671 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000671_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g110020.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g025693 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06328 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G075800.1 EBS, Ceric.06G075800 component *(SHL/EBS) of PRC1 complex & original... 0.04 OrthoFinder output from all 47 species
Dac_g37179 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
Mp6g03160.1 EBS component BAH of BAH-EMF1 Polycomb silencing complex 0.03 OrthoFinder output from all 47 species
Msp_g41329 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54584 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 22 136
IPR019787 Znf_PHD-finger 141 189
No external refs found!