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  5. Solyc01g109180.4.1

Solyc01g109180.4.1 (LRD2, LACS2, Solyc01g109180)


Aliases : LRD2, LACS2, Solyc01g109180

Description : Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana (sp|q9xia9|lacs2_arath : 984.0) & Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond(50.6.2 : 432.2)


Gene families : OG0000612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g109180.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G49430 LRD2, LACS2 long-chain acyl-CoA synthetase 2 0.22 OrthoFinder output from all 47 species
AT2G47240 CER8, LACS1 AMP-dependent synthetase and ligase family protein 0.09 OrthoFinder output from all 47 species
Adi_g114074 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aev_g04110 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.06 OrthoFinder output from all 47 species
Ala_g09619 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.24G023000.1 LACS4, Ceric.24G023000 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Cre03.g182050 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre12.g500715 CER8, LACS1 Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g13723 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.07 OrthoFinder output from all 47 species
Dcu_g08877 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.08 OrthoFinder output from all 47 species
Dde_g01611 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01028155001 CER8, LACS1 Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01031892001 LRD2, LACS2 Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_09959 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Gb_18621 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_21648 LACS6, ATLACS6 peroxisomal long-chain acyl-CoA synthetase 0.03 OrthoFinder output from all 47 species
Gb_32132 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Gb_32723 LACS6, ATLACS6 Long chain acyl-CoA synthetase 6, peroxisomal... 0.03 OrthoFinder output from all 47 species
LOC_Os01g48910.2 LACS4, LOC_Os01g48910 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
LOC_Os11g35400.1 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Len_g16036 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Lfl_g08320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
MA_10432761g0010 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
MA_10435049g0010 LACS6, ATLACS6 Long chain acyl-CoA synthetase 7, peroxisomal... 0.02 OrthoFinder output from all 47 species
MA_10437042g0010 LACS6, ATLACS6 Long chain acyl-CoA synthetase 6, peroxisomal... 0.02 OrthoFinder output from all 47 species
MA_839621g0010 No alias Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Msp_g09778 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Msp_g11320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Nbi_g03105 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Pp3c6_11410V3.1 LACS4, Pp3c6_11410 AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
Ppi_g17117 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025894 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g15770 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Sam_g16833 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Solyc09g075770.3.1 LACS6, ATLACS6,... peroxisomal long-chain acyl-CoA synthetase 0.04 OrthoFinder output from all 47 species
Spa_g26451 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.06 OrthoFinder output from all 47 species
Spa_g40891 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Spa_g47685 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Zm00001e024608_P001 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.13 OrthoFinder output from all 47 species
Zm00001e040332_P001 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 58 521
No external refs found!