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  5. Solyc01g106020.3.1

Solyc01g106020.3.1 (HEN4, Solyc01g106020)


Aliases : HEN4, Solyc01g106020

Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 183.0)


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g106020.3.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00116200 evm_27.TU.AmTr_v1... KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00092p00116010 evm_27.TU.AmTr_v1... KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054731 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15857 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04253 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aop_g19887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66970.t1 Aspi01Gene66970 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12254 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g57452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.32G061200.1 Ceric.32G061200 not classified & original description: pacid=50597564... 0.03 OrthoFinder output from all 47 species
Dac_g09565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16071 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Dcu_g12897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os06g23460.1 LOC_Os06g23460 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
LOC_Os09g32300.1 LOC_Os09g32300 KH domain-containing protein HEN4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g36497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_20325g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g12132 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019575 No alias not classified & original description: CDS=226-2445 0.03 OrthoFinder output from all 47 species
Sam_g12504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13844 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Smo73985 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039986_P003 Zm00001e039986 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 42 96
IPR004088 KH_dom_type_1 577 640
IPR004088 KH_dom_type_1 302 350
IPR004088 KH_dom_type_1 388 451
IPR004088 KH_dom_type_1 153 219
No external refs found!