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  5. Solyc01g105330.3.1

Solyc01g105330.3.1 (ATMBD8, MBD8, Solyc01g105330)


Aliases : ATMBD8, MBD8, Solyc01g105330

Description : Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana (sp|q9lme6|mbd8_arath : 109.0)


Gene families : OG0010702 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010702_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g105330.3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009040001 ATMBD8, MBD8 Methyl-CpG-binding domain-containing protein 8... 0.04 OrthoFinder output from all 47 species
LOC_Os08g37904.2 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.03 OrthoFinder output from all 47 species
LOC_Os08g37920.1 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.04 OrthoFinder output from all 47 species
LOC_Os09g29750.1 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.03 OrthoFinder output from all 47 species
Zm00001e003405_P001 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.08 OrthoFinder output from all 47 species
Zm00001e010007_P001 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.06 OrthoFinder output from all 47 species
Zm00001e024319_P003 ATMBD8, MBD8,... Methyl-CpG-binding domain-containing protein 8... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!