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  5. Solyc01g104510.3.1

Solyc01g104510.3.1 (MSI1, MEE70, ATMSI1,...)


Aliases : MSI1, MEE70, ATMSI1, Solyc01g104510

Description : component CAF1c/MSI of CAF1 histone chaperone complex. component MSI1 of VRN/FIS/EMF core complexes


Gene families : OG0001615 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001615_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g104510.3.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g01784 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
Als_g14396 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Ceric.19G025100.1 MSI1, MEE70,... component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Cre12.g523200 MSI1, MEE70, ATMSI1 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
GSVIVT01013978001 MSI1, MEE70, ATMSI1 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Gb_03680 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex.... 0.04 OrthoFinder output from all 47 species
LOC_Os03g43890.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex.... 0.04 OrthoFinder output from all 47 species
LOC_Os09g36900.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
Len_g05275 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
MA_10429996g0010 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
MA_109564g0010 MSI1, MEE70, ATMSI1 Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
MA_4921g0010 MSI1, MEE70, ATMSI1 WD-40 repeat-containing protein MSI1 OS=Solanum... 0.04 OrthoFinder output from all 47 species
MA_70799g0010 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex 0.04 OrthoFinder output from all 47 species
Mp4g21020.1 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex.... 0.04 OrthoFinder output from all 47 species
Nbi_g03521 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011535 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e005036_P003 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex.... 0.02 OrthoFinder output from all 47 species
Zm00001e012412_P002 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.02 OrthoFinder output from all 47 species
Zm00001e035979_P001 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 19 88
IPR001680 WD40_repeat 264 302
IPR001680 WD40_repeat 174 207
IPR001680 WD40_repeat 367 402
IPR001680 WD40_repeat 220 256
No external refs found!