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  5. Solyc01g100060.4.1

Solyc01g100060.4.1 (Solyc01g100060)


Aliases : Solyc01g100060

Description : Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana (sp|q8lb54|prp38_arath : 326.0)


Gene families : OG0004863 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004863_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g100060.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT2G40650 No alias PRP38 family protein 0.08 OrthoFinder output from all 47 species
Als_g58256 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05834 No alias splicing factor *(PRP38) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13422 No alias splicing factor *(PRP38) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g00905 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G099000.1 Ceric.13G099000 splicing factor *(PRP38) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.24 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cre12.g503400 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dac_g08450 No alias splicing factor *(PRP38) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18786 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031188001 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os09g01630.1 LOC_Os09g01630 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
MA_214707g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp4g12850.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Sam_g26333 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11595 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15678 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009450_P001 Zm00001e009450 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 10 174
IPR024767 PRP38_C 179 275
No external refs found!