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  5. Solyc01g096850.4.1

Solyc01g096850.4.1 (FRS3, Solyc01g096850)


Aliases : FRS3, Solyc01g096850

Description : transcription factor (FAR1)


Gene families : OG0002906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g096850.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G52520 FRS6 FAR1-related sequence 6 0.02 OrthoFinder output from all 47 species
AT1G76320 FRS4 FAR1-related sequence 4 0.03 OrthoFinder output from all 47 species
AT3G06250 FRS7 FAR1-related sequence 7 0.04 OrthoFinder output from all 47 species
AT4G15090 FAR1 FRS (FAR1 Related Sequences) transcription factor family 0.04 OrthoFinder output from all 47 species
AT4G38170 FRS9 FAR1-related sequence 9 0.03 OrthoFinder output from all 47 species
AT5G18960 FRS12 FAR1-related sequence 12 0.04 OrthoFinder output from all 47 species
GSVIVT01011502001 FRS5 RNA biosynthesis.transcriptional activation.FAR1... 0.02 OrthoFinder output from all 47 species
GSVIVT01013441001 FRS9 RNA biosynthesis.transcriptional activation.FAR1... 0.02 OrthoFinder output from all 47 species
LOC_Os02g33750.1 FRS7, LOC_Os02g33750 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os03g08370.1 FRS5, LOC_Os03g08370 transcription factor (FAR1) 0.02 OrthoFinder output from all 47 species
LOC_Os03g15010.1 FRS6, LOC_Os03g15010 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os03g62660.1 FRS8, LOC_Os03g62660 transcription factor (FAR1) 0.08 OrthoFinder output from all 47 species
LOC_Os04g40060.1 FRS6, LOC_Os04g40060 transcription factor (FAR1) 0.02 OrthoFinder output from all 47 species
LOC_Os07g31400.1 FRS4, LOC_Os07g31400 transcription factor (FAR1) 0.08 OrthoFinder output from all 47 species
LOC_Os07g31420.1 FRS6, LOC_Os07g31420 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
LOC_Os07g37630.1 FRS7, LOC_Os07g37630 transcription factor (FAR1) 0.06 OrthoFinder output from all 47 species
LOC_Os07g42400.1 FAR1, LOC_Os07g42400 transcription factor (FAR1) 0.02 OrthoFinder output from all 47 species
LOC_Os08g06930.1 FRS9, LOC_Os08g06930 transcription factor (FAR1) 0.06 OrthoFinder output from all 47 species
LOC_Os12g12380.1 FRS5, LOC_Os12g12380 transcription factor (FAR1) 0.06 OrthoFinder output from all 47 species
Solyc03g117520.3.1 FRS6, Solyc03g117520 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 64 139
IPR007527 Znf_SWIM 557 590
IPR018289 MULE_transposase_dom 279 370
No external refs found!