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  5. Solyc01g095950.1.1

Solyc01g095950.1.1 (RPOB, Solyc01g095950)


Aliases : RPOB, Solyc01g095950

Description : DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum (sp|q2mij5|rpob_solbu : 154.0)


Gene families : OG0005891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g095950.1.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00108130 RPOB,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.09 OrthoFinder output from all 47 species
AMTR_s00145p00090170 RPOB,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.07 OrthoFinder output from all 47 species
AMTR_s00626p00011520 RPOB,... DNA-directed RNA polymerase subunit beta OS=Morus indica 0.09 OrthoFinder output from all 47 species
AMTR_s01499p00009870 RPOB,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.07 OrthoFinder output from all 47 species
ATCG00190 RPOB RNA polymerase subunit beta 0.15 OrthoFinder output from all 47 species
Aev_g18557 RPOB core component *(RpoB) of plastid-encoded RNA polymerase... 0.2 OrthoFinder output from all 47 species
Ceric.02G012900.1 RPOB, Ceric.02G012900 not classified & original description: pacid=50585256... 0.09 OrthoFinder output from all 47 species
Ceric.33G023100.1 RPOB, Ceric.33G023100 not classified & original description: pacid=50607182... 0.13 OrthoFinder output from all 47 species
Ceric.38G009900.1 RPOB, Ceric.38G009900 not classified & original description: pacid=50579505... 0.16 OrthoFinder output from all 47 species
GSVIVT01035251001 RPOB DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
Gb_02251 RPOB RpoB core component plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Gb_06830 RPOB DNA-directed RNA polymerase subunit beta OS=Pinus... 0.07 OrthoFinder output from all 47 species
Gb_09029 RPOB DNA-directed RNA polymerase subunit beta OS=Cycas... 0.08 OrthoFinder output from all 47 species
LOC_Os04g16820.1 RPOB, LOC_Os04g16820 RpoB core component plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os05g22830.1 RPOB, LOC_Os05g22830 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
LOC_Os05g22860.1 RPOB, LOC_Os05g22860 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.19 OrthoFinder output from all 47 species
Mp1g13170.1 RPOB DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.04 OrthoFinder output from all 47 species
Mp6g01430.1 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Nbi_g14004 RPOB core component *(RpoB) of plastid-encoded RNA polymerase... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027472 RPOB not classified & original description: CDS=1-1728 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!