Solyc01g092950.3.1 (SOC1, AGL20, ATSOC1,...)

Aliases : SOC1, AGL20, ATSOC1, Solyc01g092950

Description : MADS-box protein SOC1 OS=Arabidopsis thaliana (sp|o64645|soc1_arath : 80.1)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g092950.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G22540	SVP, AGL22	K-box region and MADS-box transcription factor family protein	0.04	OrthoFinder output from all 47 species
AT5G13790	AGL15	AGAMOUS-like 15	0.02	OrthoFinder output from all 47 species
Adi_g010317	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089152	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15810.t1	STK, AGL11,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene19451.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene72145.t1	AGL30, Aspi01Gene72145	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000595	No alias	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g33793	AGL14	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.39G001800.1	AGL104, Ceric.39G001800	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Ehy_g10207	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01000175001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01010521001	AGL9, SEP3	RNA biosynthesis.transcriptional activation.MADS box...	0.01	OrthoFinder output from all 47 species
Gb_16301	STK, AGL11	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
LOC_Os02g01355.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.1	OrthoFinder output from all 47 species
Len_g27271	AGL9, SEP3	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g06052	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g42895	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006240	No alias	not classified & original description: CDS=1-240	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0271.g027022	AGL7, AP1	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Solyc02g065730.2.1	AGL8, FUL, Solyc02g065730	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc02g091550.2.1	AGL21, Solyc02g091550	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Solyc04g005320.3.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc05g012020.4.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Solyc06g069430.3.1	AGL8, FUL, Solyc06g069430	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Solyc11g069770.2.1	AGL29, Solyc11g069770	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc12g038510.2.1	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Tin_g11033	AGL30	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e031267_P003	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	65	149

External Links

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Solyc01g092950.3.1 (SOC1, AGL20, ATSOC1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation