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  5. Solyc01g088820.2.1

Solyc01g088820.2.1 (Solyc01g088820)


Aliases : Solyc01g088820

Description : transcription factor (Trihelix)


Gene families : OG0002113 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002113_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc01g088820.2.1

Target Alias Description ECC score Gene Family Method Actions
Ceric.16G077000.1 Ceric.16G077000 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Lfl_g01293 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26796 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28209 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002375_P001 Zm00001e002375 transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!