Solyc01g087670.3.1 (Solyc01g087670)

Aliases : Solyc01g087670

Description : SSU processome assembly factor (UTP21)

Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g087670.3.1
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AT4G04940	No alias	transducin family protein / WD-40 repeat family protein	0.16	OrthoFinder output from all 47 species
Adi_g103599	No alias	SSU processome assembly factor *(UTP21) & original...	0.04	OrthoFinder output from all 47 species
Ala_g07767	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0074.g037313	No alias	SSU processome assembly factor *(UTP21) & original...	0.04	OrthoFinder output from all 47 species
Ceric.19G039200.1	Ceric.19G039200	SSU processome assembly factor *(UTP21) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021348.51	No alias	No description available	0.05	OrthoFinder output from all 47 species
Cre10.g466250	No alias	No description available	0.13	OrthoFinder output from all 47 species
Dcu_g02020	No alias	SSU processome assembly factor *(UTP21) & original...	0.06	OrthoFinder output from all 47 species
Ehy_g18111	No alias	SSU processome assembly factor *(UTP21) & original...	0.06	OrthoFinder output from all 47 species
GSVIVT01034133001	No alias	No description available	0.08	OrthoFinder output from all 47 species
Gb_24979	No alias	SSU processome assembly factor (UTP21)	0.09	OrthoFinder output from all 47 species
LOC_Os06g43690.1	LOC_Os06g43690	SSU processome assembly factor (UTP21)	0.22	OrthoFinder output from all 47 species
MA_42826g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp3g13780.1	No alias	SSU processome assembly factor (UTP21)	0.15	OrthoFinder output from all 47 species
Ppi_g02333	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Sam_g13536	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Smo78691	No alias	No description available	0.04	OrthoFinder output from all 47 species
Tin_g11820	No alias	SSU processome assembly factor *(UTP21) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e037473_P002	Zm00001e037473	SSU processome assembly factor (UTP21)	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007319	SSU_processome_Utp21	684	903
IPR024977	Apc4_WD40_dom	190	276
IPR001680	WD40_repeat	548	585

External Links

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Solyc01g087670.3.1 (Solyc01g087670)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation