Solyc01g087430.3.1 (Solyc01g087430)


Aliases : Solyc01g087430

Description : no hits & (original description: none)


Gene families : OG0004276 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004276_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g087430.3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Adi_g021931 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Adi_g076898 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Adi_g107182 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ala_g04865 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g10021 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Aob_g11408 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Aop_g11120 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cba_g69271 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.02G090500.1 Ceric.02G090500 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Ceric.27G068500.1 Ceric.27G068500 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.08 OrthoFinder output from all 47 species
Dac_g09473 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Dcu_g23595 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g19588 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
GSVIVT01032131001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_08461 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g34330.1 LOC_Os12g34330 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Len_g20530 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
MA_76768g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g10850.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g07738 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pir_g17646 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Ppi_g32784 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Sam_g13974 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo444121 No alias Probable tyrosine-protein phosphatase DSP2 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Zm00001e018296_P003 Zm00001e018296 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!