1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g080785.1.1

Solyc01g080785.1.1 (AGL61, DIA, Solyc01g080785)


Aliases : AGL61, DIA, Solyc01g080785

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g080785.1.1
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00254030 SHP2, AGL5,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00109p00019490 AGL16,... No description available 0.03 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.06 OrthoFinder output from all 47 species
AT2G22630 AGL17 AGAMOUS-like 17 0.06 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.05 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT4G24540 AGL24 AGAMOUS-like 24 0.05 OrthoFinder output from all 47 species
AT5G13790 AGL15 AGAMOUS-like 15 0.03 OrthoFinder output from all 47 species
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.06 OrthoFinder output from all 47 species
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g026151 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19451.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007710 AGL6 MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Cba_g16031 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G037700.1 AGL65, Ceric.06G037700 MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.16G027500.1 AGL16, Ceric.16G027500 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.27G057900.1 STK, AGL11,... MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g04461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10747 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12956 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01006592001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01008139001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008806001 PI RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01009171001 SVP, AGL22 RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01010521001 AGL9, SEP3 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01012110001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01018446001 AGL42 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01018450001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01025945001 STK, AGL11 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01026207001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01033253001 AGL15 RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
GSVIVT01035477001 AGL30 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01037026001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01038474001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.07 OrthoFinder output from all 47 species
Gb_03806 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_03807 AGL16 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_41550 No alias transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g08754.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os06g23950.1 LOC_Os06g23950 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
MA_276701g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_333471g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_34737g0010 AGL17 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_6279308g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_8636733g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_9841429g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Ore_g42767 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36418 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04968 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.12 OrthoFinder output from all 47 species
Ppi_g32449 AGL21 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55983 AGL3, SEP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217 AGL15 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0932.g027847 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g13248 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13249 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26914 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g089210.4.1 AGL7, AP1, Solyc02g089210 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
Solyc04g005320.3.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
Solyc06g059970.4.1 PI, Solyc06g059970 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc10g017630.3.1 SOC1, AGL20,... MADS-box protein SOC1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc10g044965.1.1 AGL21, Solyc10g044965 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g22852 AGL65 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26227 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55243 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11248 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28519 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 14 61
No external refs found!