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  5. Solyc01g079130.2.1

Solyc01g079130.2.1 (Solyc01g079130)


Aliases : Solyc01g079130

Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana (sp|q949z1|pglr4_arath : 544.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 195.7)


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g079130.2.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT1G02460 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g32139 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g36775 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g12304 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46867.t1 Aspi01Gene46867 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024436 No alias EC_3.2 glycosylase & original description: CDS=1-1320 0.02 OrthoFinder output from all 47 species
Azfi_s0090.g042602 No alias EC_3.2 glycosylase & original description: CDS=1-1503 0.05 OrthoFinder output from all 47 species
Ehy_g04883 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032116001 ADPG2, PGAZAT Polygalacturonase OS=Persea americana 0.04 OrthoFinder output from all 47 species
GSVIVT01038447001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g19170.1 LOC_Os01g19170 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os03g11760.1 QRT2, LOC_Os03g11760 Polygalacturonase OS=Actinidia deliciosa... 0.02 OrthoFinder output from all 47 species
MA_63122g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 OrthoFinder output from all 47 species
Mp3g10720.1 No alias Polygalacturonase OS=Chamaecyparis obtusa... 0.02 OrthoFinder output from all 47 species
Nbi_g06863 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24091 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Smo111266 ADPG2, PGAZAT Polygalacturonase OS=Chamaecyparis obtusa 0.02 OrthoFinder output from all 47 species
Solyc04g008230.3.1 Solyc04g008230 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g06548 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006092_P001 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.05 OrthoFinder output from all 47 species
Zm00001e013553_P001 Zm00001e013553 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e026240_P001 Zm00001e026240 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 104 421
No external refs found!