Solyc01g060130.3.1 (Solyc01g060130)

Aliases : Solyc01g060130

Description : GTPase (Sar1)

Gene families : OG0001158 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001158_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g060130.3.1
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
Als_g10072	SAR2, ATSARA1C,...	small GTPase *(Sar1) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000812	SAR1, ATSAR1B,...	small GTPase *(Sar1) & original description: CDS=222-803	0.03	OrthoFinder output from all 47 species
Cba_g14906	SAR2, ATSARA1C,...	small GTPase *(Sar1) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g31223	SAR1, ATSAR1B,...	small GTPase *(Sar1) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g69356	SAR2, ATSARA1C,...	small GTPase *(Sar1) & original description: none	0.03	OrthoFinder output from all 47 species
Cre11.g468300	SAR2, ATSARA1C,...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.03	OrthoFinder output from all 47 species
LOC_Os01g23620.1	SAR2, ATSARA1C,...	GTPase (Sar1)	0.03	OrthoFinder output from all 47 species
Msp_g30180	SAR2, ATSARA1C,...	small GTPase *(Sar1) & original description: none	0.04	OrthoFinder output from all 47 species
Smo165998	SAR2, ATSARA1C,...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006689	Small_GTPase_ARF/SAR	8	192

External Links

No external refs found!