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  5. Solyc01g017480.1.1

Solyc01g017480.1.1 (YCF1.1, Solyc01g017480)


Aliases : YCF1.1, Solyc01g017480

Description : Protein TIC 214 OS=Solanum tuberosum (sp|q2vec3|ti214_soltu : 166.0)


Gene families : OG0007689 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007689_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g017480.1.1

Target Alias Description ECC score Gene Family Method Actions
ATMG00370 ORF199 Ycf1 protein 0.05 OrthoFinder output from all 47 species
Solyc00g500196.1.1 YCF1.1, Solyc00g500196 Protein TIC 214 OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
Solyc00g500324.1.1 YCF1.2, Solyc00g500324 component Tic214 of inner envelope TIC-20 complex 0.04 OrthoFinder output from all 47 species
Solyc02g011850.3.1 YCF1.2, Solyc02g011850 Protein TIC 214 OS=Solanum lycopersicum... 0.06 OrthoFinder output from all 47 species
Solyc02g011860.1.1 YCF1.1, Solyc02g011860 Protein TIC 214 OS=Solanum lycopersicum... 0.07 OrthoFinder output from all 47 species
Solyc04g045550.1.1 YCF1.2, Solyc04g045550 Protein TIC 214 OS=Solanum lycopersicum... 0.06 OrthoFinder output from all 47 species
Solyc05g016220.1.1 YCF1.2, Solyc05g016220 Protein TIC 214 OS=Solanum lycopersicum... 0.1 OrthoFinder output from all 47 species
Solyc11g021180.2.1 Solyc11g021180 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc11g021300.2.1 Solyc11g021300 Protein TIC 214 OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008896 TIC214 2 118
No external refs found!