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  5. Solyc01g009330.1.1

Solyc01g009330.1.1 (PUB22, Solyc01g009330)


Aliases : PUB22, Solyc01g009330

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 417.0)


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g009330.1.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00017p00223570 PUB26,... U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00030p00161650 PUB23,... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00043p00215340 PUB8, B80,... U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00069p00038840 PUB22,... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT3G19380 PUB25 plant U-box 25 0.02 OrthoFinder output from all 47 species
AT3G52450 PUB22 plant U-box 22 0.04 OrthoFinder output from all 47 species
Adi_g003285 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g045017 CMPG1, ATCMPG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077173 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11423 PUB15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12714 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12715 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g23185 CMPG1, ATCMPG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01235 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g20185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18761 PUB29, ATPUB29 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20934 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15171.t1 PUB29, ATPUB29,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19342.t1 PUB26, Aspi01Gene19342 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35689.t1 PUB25, Aspi01Gene35689 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39077.t2 Aspi01Gene39077 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44311.t1 PUB22, Aspi01Gene44311 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44320.t1 PUB23, Aspi01Gene44320 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55033.t1 PUB25, Aspi01Gene55033 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56365.t1 PUB25, Aspi01Gene56365 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16814 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g42548 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G004600.1 PUB26, Ceric.07G004600 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.08G030400.1 PUB26, Ceric.08G030400 U-Box-group-III E3 ubiquitin ligase & original... 0.02 OrthoFinder output from all 47 species
Ceric.08G042000.1 Ceric.08G042000 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g11691 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18955 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26825 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06700 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14998 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16036 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21913 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02490 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_02633 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_19502 PUB23 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os03g13740.1 LOC_Os03g13740 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g34030.1 PUB23, LOC_Os04g34030 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os04g49970.1 PUB23, LOC_Os04g49970 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g01213 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03802 PUB26 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24284 PUB25 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10433846g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_126399g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_415393g0010 PUB25 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_48004g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_52661g0010 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_5536318g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_6335g0010 CMPG2, ATCMPG2 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Mp3g01700.1 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g11000.1 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g04802 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06628 PUB25 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g35004 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42463 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44415 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g34239 No alias E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g12004 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32476 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717 PUB26 not classified & original description: CDS=1-1404 0.05 OrthoFinder output from all 47 species
Smo231257 PUB26 U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo403954 PUB25 U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g007050.3.1 PUB24, Solyc01g007050 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g068940.1.1 PUB24, Solyc11g068940 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Tin_g15093 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008167_P001 PUB23, Zm00001e008167 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e039417_P001 PUB23, Zm00001e039417 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 6 77
No external refs found!