Solyc01g009000.3.1 (RHC1A, Solyc01g009000)

Aliases : RHC1A, Solyc01g009000

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 246.0)

Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g009000.3.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g003792	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05960	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Aob_g01998	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Ceric.16G066200.1	Ceric.16G066200	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000227.13	RHC1A	No description available	0.03	OrthoFinder output from all 47 species
Dde_g08219	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_41745	No alias	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os03g20870.1	LOC_Os03g20870	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
LOC_Os10g34590.1	LOC_Os10g34590	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum...	0.03	OrthoFinder output from all 47 species
Lfl_g24820	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g43938	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Pir_g24146	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	Interproscan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	190	232
IPR039525	RNF126-like_zinc-ribbon	7	37

External Links

No external refs found!