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  5. Solyc01g006090.3.1

Solyc01g006090.3.1 (Solyc01g006090)


Aliases : Solyc01g006090

Description : pre-60S ribosomal subunit assembly factor (EBP2)


Gene families : OG0004650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004650_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g006090.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00176430 evm_27.TU.AmTr_v1... Probable rRNA-processing protein EBP2 homolog... 0.07 OrthoFinder output from all 47 species
Aev_g00627 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.02 OrthoFinder output from all 47 species
Aop_g09403 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.05 OrthoFinder output from all 47 species
Azfi_s0705.g082696 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.04 OrthoFinder output from all 47 species
Ceric.28G019100.1 Ceric.28G019100 pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.12 No alias Probable rRNA-processing protein EBP2 homolog... 0.12 OrthoFinder output from all 47 species
Cre07.g351750 No alias Probable rRNA-processing protein EBP2 homolog... 0.07 OrthoFinder output from all 47 species
Dac_g09923 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01018514001 No alias Probable rRNA-processing protein EBP2 homolog... 0.09 OrthoFinder output from all 47 species
LOC_Os07g29320.1 LOC_Os07g29320 pre-60S ribosomal subunit assembly factor (EBP2) 0.04 OrthoFinder output from all 47 species
MA_138177g0010 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.12 OrthoFinder output from all 47 species
Mp3g18310.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.15 OrthoFinder output from all 47 species
Pp3c6_25210V3.1 Pp3c6_25210 rRNA processing protein-related 0.03 OrthoFinder output from all 47 species
Sam_g13265 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.02 OrthoFinder output from all 47 species
Sam_g25020 No alias pre-60S ribosomal subunit assembly factor *(EBP2) &... 0.05 OrthoFinder output from all 47 species
Smo175633 No alias Probable rRNA-processing protein EBP2 homolog... 0.03 OrthoFinder output from all 47 species
Zm00001e010357_P001 Zm00001e010357 pre-60S ribosomal subunit assembly factor (EBP2) 0.13 OrthoFinder output from all 47 species
Zm00001e013941_P001 Zm00001e013941 pre-60S ribosomal subunit assembly factor (EBP2) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR008610 Ebp2 24 288
No external refs found!