Solyc00g500290.1.1 (RPOC2, Solyc00g500290)

Aliases : RPOC2, Solyc00g500290

Description : RpoC2 core component plastid-encoded RNA polymerase

Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500290.1.1
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00028p00130230	RPOC2,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.05	OrthoFinder output from all 47 species
AMTR_s00390p00012910	RPOC2,...	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
ATCG00170	RPOC2	DNA-directed RNA polymerase family protein	0.1	OrthoFinder output from all 47 species
Aev_g15088	RPOC2	core component *(RpoC2) of plastid-encoded RNA...	0.06	OrthoFinder output from all 47 species
Ceric.02G012700.1	RPOC2, Ceric.02G012700	core component *(RpoC2) of plastid-encoded RNA...	0.04	OrthoFinder output from all 47 species
Ceric.06G046000.1	RPOC2, Ceric.06G046000	not classified & original description: pacid=50620845...	0.06	OrthoFinder output from all 47 species
Ceric.29G004900.1	RPOC2, Ceric.29G004900	core component *(RpoC2) of plastid-encoded RNA...	0.04	OrthoFinder output from all 47 species
Ceric.32G060700.1	RPOC2, Ceric.32G060700	not classified & original description: pacid=50597350...	0.06	OrthoFinder output from all 47 species
Ceric.38G010100.1	RPOC2, Ceric.38G010100	core component *(RpoC2) of plastid-encoded RNA...	0.08	OrthoFinder output from all 47 species
Ceric.38G010200.1	RPOC2, Ceric.38G010200	not classified & original description: pacid=50579905...	0.06	OrthoFinder output from all 47 species
GSVIVT01019173001	RPOC2	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.06	OrthoFinder output from all 47 species
GSVIVT01021669001	RPOC2	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01030958001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.03	OrthoFinder output from all 47 species
Gb_09031	RPOC2	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.04	OrthoFinder output from all 47 species
Gb_09032	RPOC2	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.04	OrthoFinder output from all 47 species
Gb_10415	RPOC2	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.03	OrthoFinder output from all 47 species
Gb_26285	RPOC2	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.03	OrthoFinder output from all 47 species
LOC_Os04g16830.1	RPOC2, LOC_Os04g16830	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.08	OrthoFinder output from all 47 species
Mp1g00060.1	RPOC2	RpoC2 core component plastid-encoded RNA polymerase	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027467	RPOC2	not classified & original description: CDS=1-840	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027468	RPOC2	not classified & original description: CDS=1-702	0.04	OrthoFinder output from all 47 species
Solyc08g028920.1.1	RPOC2, Solyc08g028920	DNA-directed RNA polymerase subunit beta OS=Guizotia...	0.04	OrthoFinder output from all 47 species
Solyc12g062650.1.1	RPOC2, Solyc12g062650	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.05	OrthoFinder output from all 47 species
Zm00001e042060_P001	RPOC2, Zm00001e042060	RpoC2 core component plastid-encoded RNA polymerase	0.03	OrthoFinder output from all 47 species
Zm00001e042169_P001	RPOC2, Zm00001e042169	RpoC2 core component plastid-encoded RNA polymerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	176	366
IPR007083	RNA_pol_Rpb1_4	99	161
IPR007081	RNA_pol_Rpb1_5	1193	1281

External Links

No external refs found!

Solyc00g500290.1.1 (RPOC2, Solyc00g500290)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation