Solyc00g500254.1.1 (RPL20, Solyc00g500254)

Aliases : RPL20, Solyc00g500254

Description : 50S ribosomal protein L20, chloroplastic OS=Coffea arabica (sp|a0a358|rk20_cofar : 85.5)

Gene families : OG0008286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008286_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500254.1.1
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s02071p00004290	evm_27.TU.AmTr_v1...	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa	0.04	OrthoFinder output from all 47 species
AT2G07675	No alias	Ribosomal protein S12/S23 family protein	0.05	OrthoFinder output from all 47 species
ATMG00980	RPSL2	Ribosomal protein S12/S23 family protein	0.05	OrthoFinder output from all 47 species
Aob_g13504	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cba_g12837	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.01G056200.1	Ceric.01G056200	not classified & original description: pacid=50592272...	0.03	OrthoFinder output from all 47 species
Ceric.01G057700.1	Ceric.01G057700	not classified & original description: pacid=50591871...	0.05	OrthoFinder output from all 47 species
Ceric.02G004700.1	Ceric.02G004700	not classified & original description: pacid=50584292...	0.06	OrthoFinder output from all 47 species
Ceric.05G043100.1	Ceric.05G043100	not classified & original description: pacid=50578321...	0.05	OrthoFinder output from all 47 species
Ceric.18G054400.1	Ceric.18G054400	not classified & original description: pacid=50621895...	0.08	OrthoFinder output from all 47 species
Ceric.28G052500.1	Ceric.28G052500	not classified & original description: pacid=50569929...	0.03	OrthoFinder output from all 47 species
Dcu_g49424	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01002752001	No alias	Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris	0.04	OrthoFinder output from all 47 species
Gb_26488	No alias	component mtRPS12 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os12g34062.1	LOC_Os12g34062	component mtRPS12 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Mp6g00030.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Sam_g26624	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Spa_g48002	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005813	Ribosomal_L20	42	71

External Links

No external refs found!

Solyc00g500254.1.1 (RPL20, Solyc00g500254)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation