Aliases : RPS8, Solyc00g500031
Description : component psRPL14 of large ribosomal subunit proteome. component psRPS8 of small ribosomal subunit proteome
Gene families : OG0009333 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009333_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc00g500031.1.1 | |
Cluster | HCCA: Cluster_5 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
ATCG00770 | RPS8 | ribosomal protein S8 | 0.17 | OrthoFinder output from all 47 species | |
Aev_g03624 | RPS8 | component *(uS8c) of small plastid ribosomal-subunit... | 0.19 | OrthoFinder output from all 47 species | |
Ceric.05G042100.1 | RPS8, Ceric.05G042100 | component *(uS8c) of small plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Ceric.05G049100.1 | RPS8, Ceric.05G049100 | component *(uS8c) of small plastid ribosomal-subunit... | 0.16 | OrthoFinder output from all 47 species | |
Ceric.05G052000.1 | RPS8, Ceric.05G052000 | component *(uS8c) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.1Z163700.1 | RPS8, Ceric.1Z163700 | component *(uS8c) of small plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.29G004100.1 | RPS8, Ceric.29G004100 | component *(uS8c) of small plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Ceric.38G008900.1 | RPS8, Ceric.38G008900 | component *(uS8c) of small plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
GSVIVT01014320001 | No alias | 30S ribosomal protein S8, chloroplastic OS=Vitis vinifera | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os04g16832.1 | RPS8, LOC_Os04g16832 | component psRPS8 of small ribosomal subunit proteome | 0.2 | OrthoFinder output from all 47 species | |
LOC_Os05g22718.1 | RPS8, LOC_Os05g22718 | component psRPS8 of small ribosomal subunit proteome | 0.2 | OrthoFinder output from all 47 species | |
LOC_Os08g15278.1 | RPS8, LOC_Os08g15278 | component psRPS8 of small ribosomal subunit proteome | 0.2 | OrthoFinder output from all 47 species | |
Mpzg00740.1 | RPS8 | component psRPS8 of small ribosomal subunit proteome | 0.09 | OrthoFinder output from all 47 species | |
Nbi_g03453 | RPS8 | component *(uS8c) of small plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Pir_g10782 | RPS8 | component *(uS8c) of small plastid ribosomal-subunit... | 0.1 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0150.g023358 | RPS8 | not classified & original description: CDS=1-339 | 0.05 | OrthoFinder output from all 47 species | |
Smo137784 | RPS8 | Protein biosynthesis.organelle translation... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g00741 | RPS8 | component *(uS8c) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g37385 | RPS8 | component *(uS8c) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0003954 | NADH dehydrogenase activity | IEP | HCCA |
MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | HCCA |
CC | GO:0009507 | chloroplast | IEP | HCCA |
CC | GO:0009536 | plastid | IEP | HCCA |
MF | GO:0015453 | oxidoreduction-driven active transmembrane transporter activity | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |