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  5. Smo98330

Smo98330 (TOPII, ATTOPII)


Aliases : TOPII, ATTOPII

Description : Cell cycle.interphase.DNA replication.preinitiation.TOP2 DNA topoisomerase


Gene families : OG0002559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo98330
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00101630 TOPII, ATTOPII,... Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.12 OrthoFinder output from all 47 species
AT3G23890 TOPII, ATTOPII topoisomerase II 0.1 OrthoFinder output from all 47 species
Ala_g25823 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g04680 TOPII, ATTOPII not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g14096 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.09 OrthoFinder output from all 47 species
Als_g44163 TOPII, ATTOPII not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g14194 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.13 OrthoFinder output from all 47 species
Aspi01Gene00301.t1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene03757.t1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0248.g060132 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: CDS=3554-4336 0.05 OrthoFinder output from all 47 species
Ceric.22G001800.1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.22G002000.1 TOPII, ATTOPII,... DNA topoisomerase *(TOP2) & original description:... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021432.55 TOPII, ATTOPII DNA topoisomerase 2 OS=Pisum sativum 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.1 TOPII, ATTOPII DNA topoisomerase 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021433.2 TOPII, ATTOPII DNA topoisomerase 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre01.g009250 TOPII, ATTOPII Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.02 OrthoFinder output from all 47 species
Dac_g12747 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g04147 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.09 OrthoFinder output from all 47 species
GSVIVT01032138001 TOPII, ATTOPII Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.12 OrthoFinder output from all 47 species
Gb_11673 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.1 OrthoFinder output from all 47 species
Gb_12824 TOPII, ATTOPII DNA topoisomerase 2 OS=Pisum sativum (sp|o24308|top2_pea : 112.0) 0.11 OrthoFinder output from all 47 species
LOC_Os02g47150.1 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.03 OrthoFinder output from all 47 species
Len_g11702 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.1 OrthoFinder output from all 47 species
Len_g32193 TOPII, ATTOPII not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_133272g0010 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.06 OrthoFinder output from all 47 species
MA_6634g0010 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.05 OrthoFinder output from all 47 species
Mp3g13420.1 TOPII, ATTOPII DNA topoisomerase (TOP2) 0.06 OrthoFinder output from all 47 species
Msp_g37198 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g07573 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g33256 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03282 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025783 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: CDS=115-4635 0.03 OrthoFinder output from all 47 species
Sam_g08991 No alias DNA topoisomerase *(TOP2) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc01g087500.3.1 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.08 OrthoFinder output from all 47 species
Spa_g02147 TOPII, ATTOPII not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g50976 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g55866 TOPII, ATTOPII not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g11875 TOPII, ATTOPII DNA topoisomerase *(TOP2) & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e015542_P001 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.07 OrthoFinder output from all 47 species
Zm00001e023296_P001 TOPII, ATTOPII,... DNA topoisomerase (TOP2) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003594 HATPase_C 61 208
No external refs found!