Smo96989 (AtHPR1, AtTHO1, THO1, HPR1)


Aliases : AtHPR1, AtTHO1, THO1, HPR1

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC1/HPR1 component


Gene families : OG0005828 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005828_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo96989
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Aev_g07899 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Azfi_s0252.g060313 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Cba_g27882 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001229.4 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Dcu_g09998 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
Ehy_g01414 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Lfl_g19049 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Mp3g00800.1 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from all 47 species
Sam_g15781 No alias component *(THOC1/HPR1) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Solyc01g096600.4.1 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.04 OrthoFinder output from all 47 species
Zm00001e000082_P001 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021861 THO_THOC1 129 549
No external refs found!