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  5. Smo93439

Smo93439


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo93439
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00218280 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
Adi_g002869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g012952 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31801.t1 Aspi01Gene31801 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000793 No alias not classified & original description: CDS=1-2415 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010913 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1608 0.04 OrthoFinder output from all 47 species
Azfi_s0069.g036581 No alias not classified & original description: CDS=1-1653 0.02 OrthoFinder output from all 47 species
Cba_g07785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G057800.1 REME1, Ceric.28G057800 not classified & original description: pacid=50570331... 0.02 OrthoFinder output from all 47 species
Dac_g04509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22734 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07891 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g46770.1 LOC_Os07g46770 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Len_g19011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27204 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014492 No alias not classified & original description: CDS=1-2247 0.03 OrthoFinder output from all 47 species
Smo102603 CRR2 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Smo106861 OTP82 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Tin_g17636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26741 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040855_P003 Zm00001e040855 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 969 1086
No external refs found!