Smo90823 (ATMED14, MED14, SWP)

Aliases : ATMED14, MED14, SWP

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED14 component

Gene families : OG0003954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003954_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo90823

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00266990	ATMED14, MED14,...	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
AT3G04740	ATMED14, MED14, SWP	RNA polymerase II transcription mediators	0.1	OrthoFinder output from all 47 species
Adi_g023669	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Ala_g07115	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Als_g01988	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Cba_g05342	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Ceric.06G040100.1	ATMED14, MED14,...	component *(MED14) of tail module of MEDIATOR...	0.06	OrthoFinder output from all 47 species
Cre03.g190550	No alias	No description available	0.04	OrthoFinder output from all 47 species
Ehy_g26020	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
GSVIVT01021781001	ATMED14, MED14, SWP	RNA biosynthesis.RNA polymerase II-dependent...	0.05	OrthoFinder output from all 47 species
Gb_36567	ATMED14, MED14, SWP	component MED14 of tail module of MEDIATOR transcription...	0.08	OrthoFinder output from all 47 species
LOC_Os08g24420.1	ATMED14, MED14,...	component MED14 of tail module of MEDIATOR transcription...	0.04	OrthoFinder output from all 47 species
LOC_Os09g10960.1	ATMED14, MED14,...	component MED14 of tail module of MEDIATOR transcription...	0.05	OrthoFinder output from all 47 species
Len_g30748	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
MA_10435964g0010	ATMED14, MED14, SWP	component MED14 of tail module of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
MA_10435964g0030	ATMED14, MED14, SWP	component MED14 of tail module of MEDIATOR transcription...	0.09	OrthoFinder output from all 47 species
Mp8g13300.1	ATMED14, MED14, SWP	component MED14 of tail module of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Msp_g13510	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Pir_g05142	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Pnu_g13861	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008172	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Sam_g17509	No alias	component *(MED14) of tail module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Solyc01g097320.3.1	ATMED14, MED14,...	component MED14 of tail module of MEDIATOR transcription...	0.05	OrthoFinder output from all 47 species
Spa_g04873	ATMED14, MED14, SWP	component *(MED14) of tail module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Zm00001e009618_P001	ATMED14, MED14,...	component MED14 of tail module of MEDIATOR transcription...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013947	Mediator_Med14	7	194

External Links

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Smo90823 (ATMED14, MED14, SWP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation