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  5. Smo88625

Smo88625


Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor


Gene families : OG0010161 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010161_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo88625
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00112440 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.06 OrthoFinder output from all 47 species
Aop_g21599 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g34608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38458.t1 Aspi01Gene38458 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Azfi_s0626.g079976 No alias GRAS-type transcription factor & original description: CDS=1-3258 0.05 OrthoFinder output from all 47 species
GSVIVT01019809001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.06 OrthoFinder output from all 47 species
Gb_33996 No alias transcription factor (GRAS) 0.06 OrthoFinder output from all 47 species
LOC_Os06g03710.1 LOC_Os06g03710 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Len_g11585 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10430319g0010 No alias transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Mp1g10440.1 No alias DELLA-type gibberellin signal transducer. transcription... 0.03 OrthoFinder output from all 47 species
Solyc08g080400.2.1 Solyc08g080400 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 97 485
No external refs found!