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  5. Smo85851

Smo85851 (AGL10, CAL1, CAL)


Aliases : AGL10, CAL1, CAL

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo85851
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Adi_g045544 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108171 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20345 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g38427 AGL9, SEP3 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42778 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13944.t1 AGL18, Aspi01Gene13944 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15809.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0038.g026346 SHP2, AGL5 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g20242 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g11330.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Len_g28933 GL19, AGL19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_20467g0020 AGL10, CAL1, CAL MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_211156g0010 STK, AGL11 no description available(sp|q93xh4|mads1_vitvi : 152.0) 0.01 OrthoFinder output from all 47 species
MA_25342g0010 AGL16 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_770623g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_9972589g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g47586 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47587 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11366 AGL3, SEP4 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60105 AGL18 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25142 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60352 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62341 ANR1, AGL44 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000222 AGL33 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010711 No alias MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Smo69980 AGL67 RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
Smo93174 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Solyc01g106720.1.1 AGL62, Solyc01g106720 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Spa_g47544 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49382 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23921 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027034_P001 PI, Zm00001e027034 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e032766_P001 AGL29, Zm00001e032766 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 14 46
No external refs found!