Heatmap: Cluster_25 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Aerial tissue - Light - ZT1	Aerial tissue - Light - ZT3	Aerial tissue - Light - ZT5	Aerial tissue - Light - ZT7	Aerial tissue - Light - ZT9	Aerial tissue - Light - ZT11	Aerial tissue - Dark - ZT1	Aerial tissue - Dark - ZT3	Aerial tissue - Dark - ZT5	Aerial tissue - Dark - ZT7	Aerial tissue - Dark - ZT9	Aerial tissue - Dark - ZT11	Roots	Root elongation and differentiation zone	Root meristematic zone	Aerial roots and rhizophores	Shoot tips	Microphyll	Strobili	Shoot apical meristem - AC	Shoot apical meristem - Core	Shoot apical meristem - P1	Stem - Top	Stem - Bottom	Whole plant	Aerial tissue - Stress - Dark	Aerial tissue - Stress - High light	Aerial tissue - Stress - Cont	Aerial tissue - Stress - 37C 1h	Aerial tissue - Stress - 37C 3h	Aerial tissue - Stress - 4C 1h	Aerial tissue - Stress - 4C 3h
Smo109905	-8.02	-	-7.43	-	-7.0	-	-7.19	-6.46	-	-5.72	-4.63	-	-3.88	-	-	-	-	-	4.99	-	-	-	-6.07	-5.4	-	-3.64	-5.83	-	-	-	-	-
Smo110487	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo117920 (TT7)	-	-	-	-	-	-4.73	-2.17	-3.08	-	-	-	-	-	-	-	-	-4.51	-	4.97	-	-	-	-4.69	-	-	-3.53	-	-	-3.1	-4.63	-	-
Smo126308 (RPL10B)	-3.33	-1.85	-2.83	-3.93	-4.73	-4.36	-1.1	-1.37	-3.81	-2.72	-2.71	-4.5	-2.69	-2.2	-2.07	-2.53	-2.02	-2.75	4.47	-	0.89	-2.86	-0.5	0.45	-1.36	-2.36	-3.2	-	-2.18	-1.09	-0.86	-0.42
Smo127584	-6.16	-6.13	-5.0	-5.2	-4.63	-4.37	-4.33	-4.38	-5.12	-4.53	-4.67	-5.18	-3.28	-3.92	-1.61	-4.85	-5.14	-5.11	4.93	-4.28	-5.17	-7.21	-6.58	-6.64	-7.57	-4.5	-3.06	-3.11	-5.96	-5.64	-6.29	-6.2
Smo1345	-1.86	-2.11	-2.67	-1.82	-0.83	-1.49	-1.25	-1.8	-1.62	-0.99	-1.48	-1.68	-1.43	-1.9	-1.19	-1.45	-2.04	-1.49	4.46	-	-	-	-0.19	-0.77	-2.85	-2.45	-1.76	-2.11	-3.52	-2.47	-1.04	-0.43
Smo15511	-1.92	-1.24	-1.73	-1.09	-3.6	-1.12	0.45	0.49	-1.43	-1.47	-0.94	-1.96	-1.28	-0.65	-0.39	-2.13	-1.31	-2.24	4.46	-	-	-	-2.58	-2.08	-	-	-1.96	-	-4.77	-2.07	-4.68	-4.74
Smo16986	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.98	-	-	-	-1.09	-	-	-	-	-	-	-	-	-
Smo17328	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo27935 (R1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo3288	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo3338	-	-	-	-	-	-	-	-	-	-0.88	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-0.65	-	-
Smo33909	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.96	-	-	-	-	-	-	-	-	-	-	-0.35	-	-
Smo36361	-1.79	-1.93	-2.0	-1.67	-0.95	-0.96	-1.28	-1.08	-1.65	-1.6	-1.98	-2.08	-0.55	-1.88	-0.92	-0.22	-1.11	-0.95	4.14	-4.24	-3.24	-4.09	-0.19	-0.15	0.13	-0.38	-0.78	-0.65	-0.97	-0.67	-1.89	-1.47
Smo36842	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-1.5	-	-0.96	4.96	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo38965	-2.12	-2.84	-	-	-	-1.03	-1.81	-1.48	-0.93	-2.88	-1.85	-2.74	-2.83	-	-	-1.69	-	-	4.59	-	-	-	-	-2.91	0.19	-0.62	-1.21	0.61	-1.28	-0.87	-	-
Smo38968	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo39026	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.79	-	-	-	0.63	0.41	-	-	-	-	-	-	-	0.53
Smo402661	-	-	-	-	-	-	-	-	-	-	-	-	-	-0.27	-	-	-	-	4.96	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo402765 (GLIP6)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo403106	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo404034 (TLP-3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo404385 (TLP-3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo404760	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo405401	-	-	-	-	-	-	-	-	-	-	-	-	-0.97	-	-	-	-	-	4.95	-	-	-	-0.97	-	-	-	-	-	-	-	-	-
Smo405427	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo406143	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo406500	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo406865	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo406957	-	-	-	-	-	-	-	-	-	-	-	-	-	1.36	0.73	-	-	-	4.65	-	-	-	-	1.41	-	-	-	-	-	-	-	-
Smo406960	-1.15	-2.88	-0.2	0.05	-3.64	-0.66	-1.85	-2.09	-0.28	-3.02	0.71	-0.83	-	0.91	-	0.93	-1.45	-0.84	3.97	-	-0.77	-	-	-1.26	0.25	-2.68	-	-0.46	-2.37	-1.65	-0.51	-1.23
Smo407454	-	-	-	-	-	-	-	-	-	-	-	-	-8.63	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo407504 (SSP5)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo407827	-10.09	-8.81	-	-	-	-	-7.19	-	-	-	-	-	-4.35	-3.05	-4.54	0.19	-1.64	-2.64	4.79	-4.15	-3.13	-6.04	-8.71	-4.67	-1.05	-6.59	-3.54	-6.36	-2.3	-1.11	-2.08	-0.43
Smo409236	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo412555	-	-1.51	1.0	-	-	-2.27	-2.47	-	-	-	-	-	-	-	-2.02	-	-2.17	-2.31	4.65	-	-	-	-2.16	-	1.49	-	-	-	-2.29	-	-2.33	-
Smo412910	-2.15	-3.37	-0.95	-1.85	-3.9	-1.31	-2.21	-1.97	-1.43	-1.44	-1.44	-2.14	-0.05	0.44	-2.55	0.02	-3.14	-3.27	4.47	-	-	-	-2.15	-0.93	-2.14	-0.89	-1.64	-2.55	-1.82	-2.28	-2.97	-3.85
Smo413006	-	-	-	-	-1.02	-	-	-	-	-1.47	-	-	-	-	-	-	-	-	4.86	-	-	-	-	-	-	1.04	-	-	-	-	-	-
Smo413965	-	-	-	-	-	-	-	-2.17	-	-	-	-4.21	-1.96	-	-	-1.07	-4.14	-3.46	4.91	-	-	-	-1.89	-1.55	-	-	-	-	-	-	-4.14	-3.04
Smo414794	-	-	-	-	-	-	-	-	-	-	-	-	0.66	-	-	-	-	-	4.93	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo415253	-	-	-	-	-	-	-	-	-	-	-	-0.13	0.16	-	0.27	-	-	0.67	4.65	-	-	-	0.14	-	-	-	-	-	-0.12	-	-	-
Smo416440	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo417095 (SSP5)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo418919	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo419005	-4.33	-3.58	-4.72	-5.01	-5.69	-4.66	-5.5	-6.85	-5.21	-5.0	-4.27	-4.99	-3.02	-4.33	-	-3.03	-4.71	-4.66	4.94	-	-	-	-2.43	-4.12	-2.9	-7.21	-	-5.46	-5.47	-5.23	-5.68	-5.87
Smo419059	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo419624	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.58	-	-	4.86	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo420737	-6.01	-	-4.5	-5.59	-	-1.73	-3.36	-2.59	-3.31	-5.23	-	-4.86	-5.09	-	-4.56	-3.4	-2.09	-1.79	4.68	-	-2.46	-0.24	-1.69	-2.48	0.65	-2.96	-0.92	-1.59	-2.0	-1.29	-2.82	-3.87
Smo421419	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo421817	-0.23	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.68	-	-	4.8	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo424257	-	-	-	-	-	-	-	-	-	-	-	-	-	-0.44	-	-	-	-	4.75	-	-	-	-0.13	-	-	0.89	-	-	-0.34	-0.25	-	-
Smo426858	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo428733	-	-	-0.12	-	-4.4	-	-	-4.49	-4.17	-	-	-4.17	-	-4.16	-4.05	-	-	-	4.93	-	-	-	-	-	-	-2.97	-	-	-4.2	-	-	-
Smo428836	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo430125	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo431013	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo431330	-	-0.77	0.03	-	-	-	-	-	-0.64	-	-	-	-	-	-1.27	-	-	-	4.71	-	-	-	-	-	-	-	-	1.68	-	-	-	-
Smo431777	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo444711	-7.2	-7.18	-6.23	-7.28	-7.24	-5.88	-6.99	-6.76	-6.9	-6.92	-6.71	-6.57	-6.69	-9.27	-6.54	-8.79	-8.61	-7.31	4.99	-10.67	-	-5.68	-8.35	-7.99	-5.48	-6.38	-5.63	-6.05	-7.79	-7.04	-9.96	-8.03
Smo444712	-5.35	-6.85	-6.24	-6.08	-7.4	-6.36	-9.07	-7.69	-5.94	-6.41	-7.32	-5.49	-6.64	-9.39	-9.94	-	-7.3	-6.41	4.99	-	-7.94	-	-6.35	-6.88	-7.42	-9.23	-7.37	-	-5.96	-6.73	-6.63	-6.32
Smo5960 (AGL17)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo71307	-2.7	-5.58	-	-6.88	-	-	-6.51	-2.62	-4.67	-2.0	-4.53	-6.44	-1.11	-3.84	-7.08	-2.52	-4.81	-3.44	4.8	-	-	-	-1.77	0.5	-	-3.33	-4.15	-	-3.27	-2.17	-3.86	-1.98
Smo78131	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.94	-	-	-	-	-	-	-	-	-	-	0.48	-	-
Smo83081	-1.79	-	-2.44	-0.85	-0.87	-1.98	-1.51	-	-4.45	-2.35	-2.55	-1.84	-1.1	-1.48	-1.44	-0.43	-1.45	-3.39	4.6	-	-	-	-0.96	-1.68	-	-3.05	-1.12	-	-3.17	-	-1.49	-0.73
Smo84369 (ATM1)	-5.12	-	-	-	-	-3.91	-3.12	-	-	-4.38	-3.21	-	-	-2.29	-	-	-2.97	-2.41	4.88	-3.78	-	-2.42	-4.17	-	-	-	-	-0.16	-3.13	-3.07	-4.1	-3.16
Smo84903	-1.71	-4.39	-4.19	-4.67	-5.73	-2.43	-2.37	-1.79	-2.1	-0.65	-1.43	-3.33	-5.72	-	-4.91	-1.55	-2.35	-2.17	4.69	-	-0.65	-0.6	-3.49	-3.88	-3.73	-1.92	-1.47	-2.55	-3.09	-3.01	-2.84	-3.1
Smo85851 (CAL)	-	-	-	-	-	-	-	-	-	-	-	-	-1.19	-	-	-	-	-0.7	4.84	-	-	-	-	-1.31	-	-	-	-	-1.03	-0.12	-1.06	-
Smo90349	-0.26	-	-	-	-	-	-	-	-0.51	-	-	-	-	-	-0.84	-	-	0.56	4.78	-	-	-	-	-	-	-	-	-	-	-	-0.13	-
Smo92287 (SWEET5)	-	-	-	-	-	-	-	-	-4.61	-	-3.14	-	-5.65	-	-2.65	-	-	-5.72	4.98	-	-	-	-4.76	-	-	-	-3.39	-	-5.92	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.