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  5. Smo80512

Smo80512 (TGH)


Aliases : TGH

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DCL1-HYL1 miRNA biogenesis complex.TOUGH component


Gene families : OG0004570 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo80512
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Adi_g112661 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.02 OrthoFinder output from all 47 species
Aev_g35036 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.02 OrthoFinder output from all 47 species
Ala_g12092 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Aob_g10876 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.02 OrthoFinder output from all 47 species
Aop_g20730 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.02 OrthoFinder output from all 47 species
Ceric.03G041500.1 TGH, Ceric.03G041500 component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.29 TGH RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Dcu_g15206 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.02 OrthoFinder output from all 47 species
Lfl_g10031 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.07 OrthoFinder output from all 47 species
Mp1g06200.1 TGH component TOUGH of DCL1-HYL1 miRNA biogenesis complex 0.05 OrthoFinder output from all 47 species
Ore_g44868 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Spa_g12253 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Tin_g11519 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.04 OrthoFinder output from all 47 species
Zm00001e036975_P003 TGH, Zm00001e036975 component TOUGH of DCL1-HYL1 miRNA biogenesis complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005929 cilium IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018199 peptidyl-glutamine modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0031514 motile cilium IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000061 Surp 398 446
No external refs found!