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  5. Smo79566

Smo79566


Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SYF1/MAC9 component


Gene families : OG0005359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo79566
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cba_g09535 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Cre12.g513500 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01006714001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Gb_19093 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
LOC_Os07g44970.1 LOC_Os07g44970 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Ppi_g03970 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.08 OrthoFinder output from all 47 species
Solyc01g086990.3.1 Solyc01g086990 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Solyc03g150110.1.1 Solyc03g150110 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e010869_P001 Zm00001e010869 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.06 OrthoFinder output from all 47 species
Zm00001e035711_P001 Zm00001e035711 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR008847 Suf 510 639
No external refs found!