Smo77427 (RAD23B, RAD23)

Aliases : RAD23B, RAD23

Description : Ubiquitin receptor RAD23b OS=Arabidopsis thaliana

Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo77427
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
Adi_g106017	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Als_g38438	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Als_g51273	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Aop_g07923	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Aop_g10404	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Cba_g15904	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Cba_g15905	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Cba_g67782	RAD23A	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Ceric.18G040300.1	RAD23B, RAD23,...	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Ceric.37G011200.1	RAD23B, RAD23,...	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.21	RAD23D	Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre08.g366400	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Dcu_g06924	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.05	OrthoFinder output from all 47 species
Dcu_g42383	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Dde_g08965	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g05747	RAD23A	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01011907001	RAD23-3, RAD23C	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Len_g27857	RAD23A	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g01373	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Mp1g26290.1	RAD23B, RAD23	shuttle protein (RAD23)	0.04	OrthoFinder output from all 47 species
Msp_g06770	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Msp_g25011	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g04293	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.05	OrthoFinder output from all 47 species
Nbi_g09383	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Ore_g27319	RAD23-3, RAD23C	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Ore_g43759	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Pir_g08671	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Pir_g41307	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015747	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Spa_g18087	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.05	OrthoFinder output from all 47 species
Spa_g29074	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Tin_g08949	RAD23-3, RAD23C	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Tin_g30534	RAD23B, RAD23	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e025088_P005	RAD23B, RAD23,...	shuttle protein (RAD23)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0061608	nuclear import signal receptor activity	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015360	XPC-bd	240	295

External Links

No external refs found!

Smo77427 (RAD23B, RAD23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation