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  5. Smo73689

Smo73689


Description : Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica


Gene families : OG0006885 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006885_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo73689
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT3G23620 No alias Ribosomal RNA processing Brix domain protein 0.06 OrthoFinder output from all 47 species
Adi_g009091 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
Aev_g03783 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
Aop_g12213 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0388.g067595 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001003.36 No alias Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre03.g197000 No alias Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01033782001 No alias Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_27395 No alias component ARPF2 of ARPF2-ARRS1 complex 0.02 OrthoFinder output from all 47 species
LOC_Os01g33030.1 LOC_Os01g33030 component ARPF2 of ARPF2-ARRS1 complex 0.05 OrthoFinder output from all 47 species
Mp4g01500.1 No alias component ARPF2 of ARPF2-ARRS1 complex 0.08 OrthoFinder output from all 47 species
Sam_g11434 No alias component *(ARPF2) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
Solyc10g083600.2.1 Solyc10g083600 component ARPF2 of ARPF2-ARRS1 complex 0.05 OrthoFinder output from all 47 species
Zm00001e032080_P001 Zm00001e032080 component ARPF2 of ARPF2-ARRS1 complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 35 232
No external refs found!