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  5. Smo62891

Smo62891 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo62891

Target Alias Description ECC score Gene Family Method Actions
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene60098.t1 ATCAF1, CAF1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60099.t1 ATCAF1, CAF1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65743.t1 CAF2, ATCAF2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0435.g069919 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.05 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20587 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.06 OrthoFinder output from all 47 species
MA_75293g0010 CAF2, ATCAF2 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1065.g027930 ATCAF1, CAF1 not classified & original description: CDS=49-1527 0.02 OrthoFinder output from all 47 species
Sam_g51074 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Tin_g12704 ATCAF1, CAF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003852 2-isopropylmalate synthase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 215 295
No external refs found!