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  5. Smo52385

Smo52385


Description : Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo52385
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g015683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g128550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14316 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g34345 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.03 OrthoFinder output from all 47 species
Len_g07378 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g46947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g46948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27390 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_33956g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.02 OrthoFinder output from all 47 species
MA_7256709g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.02 OrthoFinder output from all 47 species
Ore_g25561 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30153 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo404389 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.03 OrthoFinder output from all 47 species
Tin_g19161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 35 67
No external refs found!