Smo441016 (ELF7)

Aliases : ELF7

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.ELF7/PAF1 component

Gene families : OG0004313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004313_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo441016
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Adi_g074112	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Adi_g074113	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Aev_g09992	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.05	OrthoFinder output from all 47 species
Ala_g13490	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Als_g05050	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Aop_g31137	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Azfi_s0084.g038980	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Cre12.g520250	ELF7	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Dac_g07508	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Dcu_g23418	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.06	OrthoFinder output from all 47 species
Ehy_g07773	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Gb_03648	ELF7	component ELF7/PAF1 of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
LOC_Os08g06070.1	ELF7, LOC_Os08g06070	component ELF7/PAF1 of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Len_g14682	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Lfl_g03423	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Spa_g08815	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Tin_g02157	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	None	Extended
BP	GO:0006368	transcription elongation by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1990380	K48-linked deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007133	RNA_pol_II-assoc_Paf1	200	593

External Links

No external refs found!

Smo441016 (ELF7)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation