Smo440812

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).RBM25 pre-mRNA splicing regulator

Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo440812
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00267030	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
AT1G60200	No alias	splicing factor PWI domain-containing protein / RNA...	0.02	OrthoFinder output from all 47 species
Adi_g086381	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086383	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g46746	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g07363	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g56861	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g32231	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g58521	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.06G082400.1	Ceric.06G082400	pre-mRNA splicing factor *(RBM25) & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001065.13	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dcu_g20400	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09989	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g25410	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os08g32100.1	LOC_Os08g32100	pre-mRNA splicing factor (RBM25)	0.07	OrthoFinder output from all 47 species
Len_g09390	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g39469	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.05	OrthoFinder output from all 47 species
Mp4g16880.1	No alias	pre-mRNA splicing factor (RBM25)	0.05	OrthoFinder output from all 47 species
Nbi_g21895	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g40496	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g09240	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g24199	No alias	pre-mRNA splicing factor *(RBM25) & original description: none	0.05	OrthoFinder output from all 47 species
Solyc05g005620.4.1	Solyc05g005620	pre-mRNA splicing factor (RBM25)	0.03	OrthoFinder output from all 47 species
Zm00001e022382_P002	Zm00001e022382	pre-mRNA splicing factor (RBM25)	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005929	cilium	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0006376	mRNA splice site selection	IEP	HCCA
BP	GO:0006383	transcription by RNA polymerase III	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0031514	motile cilium	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	594	621

External Links

No external refs found!

Smo440812

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation