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  5. Smo419858

Smo419858


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL35 component


Gene families : OG0000495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo419858
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT2G39390 No alias Ribosomal L29 family protein 0.06 OrthoFinder output from all 47 species
AT3G09500 No alias Ribosomal L29 family protein 0.08 OrthoFinder output from all 47 species
AT3G55170 No alias Ribosomal L29 family protein 0.04 OrthoFinder output from all 47 species
AT5G02610 No alias Ribosomal L29 family protein 0.12 OrthoFinder output from all 47 species
Adi_g045235 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g124923 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g129877 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aev_g32223 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g18235 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g36147 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g11640 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g17159 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g23213 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0437.g069964 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0449.g070720 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.10G004300.1 Ceric.10G004300 component *(uL29) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.39G045700.1 Ceric.39G045700 component *(uL29) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.79 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre14.g617900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dac_g01910 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g40454 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dde_g13562 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01005972001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
GSVIVT01025050001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Gb_01009 No alias component RPL35 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Gb_33813 No alias component RPL35 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Len_g03553 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g24559 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g31826 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_10429159g0020 No alias component RPL35 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp6g05620.1 No alias component RPL35 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Msp_g02937 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g28058 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Nbi_g05063 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g15763 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ore_g17685 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g03536 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g06793 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g27935 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c13_5200V3.1 Pp3c13_5200 Ribosomal L29 family protein 0.03 OrthoFinder output from all 47 species
Pp3c3_2800V3.1 Pp3c3_2800 Ribosomal L29 family protein 0.07 OrthoFinder output from all 47 species
Ppi_g20361 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g22603 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g22608 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014105 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05972 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g23420 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g31234 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g37983 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Solyc04g010240.3.1 Solyc04g010240 component RPL35 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Spa_g07343 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g07344 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g34294 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g27506 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Zm00001e008428_P002 Zm00001e008428 component RPL35 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e014607_P001 Zm00001e014607 component RPL35 of LSU proteome component 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 8 63
No external refs found!