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  5. Smo405878

Smo405878 (LDL3)


Aliases : LDL3

Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL3 lysine-specific demethylase


Gene families : OG0003426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo405878
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00016710 LDL3,... Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
AT4G16310 LDL3 LSD1-like 3 0.12 OrthoFinder output from all 47 species
Adi_g011994 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g06185 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05833 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11027 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13453 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25574 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g27045 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13129.t1 LDL3, Aspi01Gene13129 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46596.t1 LDL3, Aspi01Gene46596 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66928.t1 LDL3, Aspi01Gene66928 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033788 LDL3 histone demethylase *(KDM1d) & original description: CDS=1-6162 0.04 OrthoFinder output from all 47 species
Cba_g14216 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g23834 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G013700.1 LDL3, Ceric.04G013700 histone demethylase *(KDM1d) & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.12G094400.1 LDL3, Ceric.12G094400 histone demethylase *(KDM1d) & original description:... 0.07 OrthoFinder output from all 47 species
Dac_g07791 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10965 LDL3 histone demethylase *(KDM1d) & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g10966 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25231 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009833001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.08 OrthoFinder output from all 47 species
GSVIVT01009834001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.09 OrthoFinder output from all 47 species
Gb_40614 LDL3 lysine-specific demethylase (LDL3) 0.06 OrthoFinder output from all 47 species
LOC_Os10g38850.1 LDL3, LOC_Os10g38850 lysine-specific demethylase (LDL3) 0.04 OrthoFinder output from all 47 species
Lfl_g04294 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
MA_120420g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_120420g0020 LDL3 lysine-specific demethylase (LDL3) 0.1 OrthoFinder output from all 47 species
Msp_g14381 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38960 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g08319 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40775 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28867 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11421 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14951 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36106 No alias histone demethylase *(KDM1d) & original description: none 0.07 OrthoFinder output from all 47 species
Solyc04g081100.3.1 LDL3, Solyc04g081100 lysine-specific demethylase (LDL3) 0.07 OrthoFinder output from all 47 species
Spa_g10310 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26760 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002184_P001 LDL3, Zm00001e002184 lysine-specific demethylase (LDL3) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 144 225
No external refs found!