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  5. Smo266648

Smo266648 (BBC1, RSU2, ATBBC1)


Aliases : BBC1, RSU2, ATBBC1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13 component


Gene families : OG0000911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo266648
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00239970 BBC1, RSU2,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AMTR_s00029p00111280 BBC1, RSU2,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AT3G49010 BBC1, RSU2, ATBBC1 breast basic conserved 1 0.19 OrthoFinder output from all 47 species
AT5G23900 No alias Ribosomal protein L13e family protein 0.1 OrthoFinder output from all 47 species
Adi_g014303 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g124336 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g17815 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g07445 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ala_g38739 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g02247 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g21602 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g02822 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g01579 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Aop_g02719 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aspi01Gene19487.t1 BBC1, RSU2,... component *(eL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001387 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0050.g031133 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Azfi_s3078.g114481 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g15784 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g28227 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g40176 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g65571 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.06G067700.1 BBC1, RSU2,... component *(eL13) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.21G071200.1 BBC1, RSU2,... component *(eL13) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.36 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Cre14.g630100 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Dac_g06660 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dac_g15740 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g00643 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g26018 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dde_g13576 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g04408 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01027212001 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
GSVIVT01030767001 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
LOC_Os03g37970.1 BBC1, RSU2,... component RPL13 of LSU proteome component 0.07 OrthoFinder output from all 47 species
LOC_Os06g02510.2 BBC1, RSU2,... component RPL13 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Lfl_g00576 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g31949 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_10430790g0030 BBC1, RSU2, ATBBC1 component RPL13 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp1g04920.1 BBC1, RSU2, ATBBC1 component RPL13 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Mp2g19790.1 BBC1, RSU2, ATBBC1 component RPL13 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Msp_g00929 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Nbi_g00223 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g00314 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g34816 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g11184 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pir_g04222 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g17440 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g54804 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Pp3c1_26280V3.1 BBC1, RSU2,... breast basic conserved 1 0.11 OrthoFinder output from all 47 species
Ppi_g19558 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g25357 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000099 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0172.g024435 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g05664 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g17930 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g17931 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g20834 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g40235 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g40236 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g41430 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Solyc08g075700.3.1 BBC1, RSU2,... component RPL13 of LSU proteome component 0.21 OrthoFinder output from all 47 species
Solyc12g096150.2.1 BBC1, RSU2,... component RPL13 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Spa_g05295 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g14938 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g24037 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g31672 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g43259 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g01593 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g03031 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e018804_P001 BBC1, RSU2,... component RPL13 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Zm00001e028430_P003 BBC1, RSU2,... component RPL13 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Zm00001e031172_P001 BBC1, RSU2,... component RPL13 of LSU proteome component 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 185
No external refs found!