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  5. Smo235261

Smo235261


Description : tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana


Gene families : OG0006308 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006308_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo235261

Target Alias Description ECC score Gene Family Method Actions
AT5G50310 No alias Galactose oxidase/kelch repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g19429 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021017.10 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g12046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007548001 No alias No description available 0.02 OrthoFinder output from all 47 species
Lfl_g09429 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g22040.1 No alias tRNA wybutosine-synthesizing protein 2/3/4... 0.06 OrthoFinder output from all 47 species
Ppi_g08364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g111390.4.1 Solyc03g111390 tRNA wybutosine-synthesizing protein 2/3/4... 0.05 OrthoFinder output from all 47 species
Zm00001e007777_P003 Zm00001e007777 Acyl-CoA-binding domain-containing protein 4... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!