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  5. Smo229071

Smo229071


Description : Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum


Gene families : OG0000218 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000218_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo229071
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00082380 USPL1, ATUSPL1,... BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
AMTR_s00059p00097920 ATRD22, RD22,... BURP domain protein RD22 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00059p00190970 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00191030 ATRD22, RD22,... BURP domain protein RD22 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00087p00099700 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Aev_g44065 JP630, PG3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28122 PG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10038 PG2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g25890 ATRD22, RD22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26053 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g64351 ATRD22, RD22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38555.t1 ATRD22, RD22,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40724 USPL1, ATUSPL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035703001 No alias BURP domain protein RD22 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os05g12400.1 LOC_Os05g12400 BURP domain-containing protein 1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os06g13240.1 PG1, LOC_Os06g13240 BURP domain-containing protein 9 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os11g06980.1 ATRD22, RD22,... BURP domain-containing protein 17 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Len_g37163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_185772g0010 ATRD22, RD22 BURP domain protein RD22 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_196669g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_79669g0010 PG2 BURP domain-containing protein 16 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_8166396g0010 No alias BURP domain-containing protein 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Ore_g04518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g35362 ATRD22, RD22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g109470.3.1 USPL1, ATUSPL1,... BURP domain protein USPL1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc05g015300.4.1 Solyc05g015300 BURP domain protein RD22 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g12001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05891 PG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003891_P006 Zm00001e003891 BURP domain-containing protein 11 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR004873 BURP_dom 347 523
No external refs found!