Heatmap: Cluster_4 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo100620 (EMB2744)
-0.31 -0.74 -0.05 -0.12 0.16 0.49 0.8 1.14 0.69 0.8 0.7 0.34 1.33 -1.29 -1.14 -0.19 -0.78 -0.19 -0.43 -2.7 -0.96 -1.01 -0.18 -0.04 -1.92 -0.45 0.18 0.26 -0.26 -0.27 -0.35 -0.43
-0.52 0.48 0.85 0.45 -1.28 -1.81 0.52 0.77 0.59 1.08 0.92 0.68 0.32 -0.96 -3.13 -0.49 -1.51 0.79 0.27 -5.12 -2.66 -6.36 -0.41 -0.03 -2.53 0.75 -1.81 -2.64 0.36 0.69 0.48 0.48
Smo102726 (RGL)
-0.43 0.63 1.08 0.88 -0.39 -0.63 0.77 1.09 0.95 1.19 0.94 0.58 1.28 -1.01 -1.76 -0.13 -1.87 -1.73 -1.22 -6.61 -3.48 - -0.44 -0.37 -4.51 0.93 -1.26 -1.92 -0.37 -0.52 -0.1 0.15
0.16 -0.18 0.31 0.98 1.18 1.09 0.63 0.57 0.31 0.23 0.28 -0.06 1.74 -1.17 -1.13 0.6 -0.93 -1.53 0.08 -3.23 -3.3 -6.32 -0.51 -0.96 -1.34 -0.1 0.27 0.46 -1.11 -1.14 -1.28 -1.31
Smo112167 (FUC1)
-0.06 0.22 0.68 0.41 0.98 0.27 0.86 0.72 0.83 0.85 0.88 0.47 -0.8 -0.51 -0.72 -0.79 -0.17 -1.28 -0.3 - -1.77 -4.07 -0.42 -0.42 -0.51 -0.34 0.23 0.2 -0.4 -0.3 -0.35 -0.16
Smo113735 (CYP704B1)
-2.31 -0.06 1.68 2.11 1.66 1.08 1.34 1.22 0.38 0.07 -0.7 -1.36 -0.73 -7.34 -8.07 -3.21 -2.59 -4.06 -0.29 -2.81 -1.86 -6.1 -0.31 -0.58 -1.04 1.88 -0.28 -0.32 -3.09 -3.57 -4.21 -3.3
Smo113858 (RGL2)
0.04 1.04 1.33 1.15 0.78 0.62 0.96 0.83 0.68 0.74 0.61 0.51 0.23 -1.09 -3.0 -0.24 -1.51 -1.34 -1.25 -2.18 -0.34 -2.23 -0.68 -0.62 -2.43 0.52 -0.37 -0.15 -1.58 -1.9 -1.47 -1.17
Smo121347 (UNE5)
0.46 0.38 0.2 0.47 0.54 0.48 -0.09 0.79 0.76 1.13 0.72 0.99 2.3 -1.14 -1.85 -0.37 -1.88 -0.83 -3.6 - -0.93 -5.17 -0.67 -2.03 -4.26 1.06 0.31 -0.48 -4.0 -1.88 -1.92 -1.71
Smo124205 (OMT1)
-1.59 0.22 0.67 1.19 0.78 0.83 1.01 0.64 0.89 1.26 0.55 0.2 2.44 -3.51 -3.29 0.0 -1.7 -0.9 -1.59 - - - -1.32 -1.12 -3.15 0.54 -0.95 -0.1 -1.37 -1.5 -2.24 -3.59
Smo128181 (GME)
-0.68 0.36 1.23 1.93 0.89 0.63 1.0 1.48 0.61 -0.31 -0.73 -1.2 -2.69 -4.56 -4.38 -1.31 -2.01 -2.59 -0.56 -4.86 -0.3 - -0.46 -0.12 1.49 1.35 -0.55 -0.05 -1.23 -1.97 -2.43 -1.87
-0.17 0.64 0.66 0.75 0.66 0.76 1.19 0.73 0.67 0.41 -0.05 -0.02 -0.37 -0.97 -1.45 0.05 -0.46 -1.11 -0.74 -0.66 -1.77 -2.63 -0.25 -0.1 -0.78 0.08 0.14 0.26 -0.44 -0.29 -0.54 -0.58
Smo132835 (DET2)
-0.12 0.28 0.37 0.91 0.77 0.8 0.61 0.94 0.53 0.43 0.04 -0.26 0.61 -0.53 -0.82 0.65 -0.53 -0.82 -0.21 -5.67 -3.22 -0.08 -0.22 -0.21 -1.56 0.49 -0.05 -0.11 -0.49 -0.59 -1.25 -1.13
Smo140678 (SIP2)
-0.87 -1.35 -0.61 0.09 0.38 0.22 0.44 0.86 0.34 0.57 0.33 -0.16 -0.11 0.74 -0.32 -0.65 -0.51 -1.61 0.65 -0.99 -0.88 -2.24 -0.46 -0.46 0.57 0.58 0.79 0.49 -0.71 -0.75 -0.09 0.26
Smo143363 (CGS)
-1.16 -0.19 0.86 1.54 1.76 1.51 0.93 0.58 0.18 -0.5 -0.67 -1.45 0.66 -0.23 -1.51 -1.46 -0.22 -1.36 -0.98 -4.31 -0.89 -3.22 0.12 -0.35 1.06 -1.48 0.21 0.0 -1.41 -1.44 -1.59 -1.65
Smo170974 (AFB2)
-1.04 -0.35 0.32 0.76 0.94 0.89 0.77 0.63 0.25 0.25 -0.1 -0.35 0.92 -0.48 -0.83 0.73 -0.35 -1.43 0.43 -0.19 0.01 -1.15 -0.57 -1.08 0.62 0.22 -0.68 -0.47 -0.97 -0.92 -1.48 -1.42
-1.3 0.85 1.61 1.69 1.73 1.63 0.97 0.08 -0.68 -1.37 -2.07 -2.57 -3.8 -1.58 -9.22 -3.64 -2.4 -2.11 -0.63 -3.65 -2.03 -7.35 -1.89 -1.89 2.14 -1.58 1.24 1.2 -2.87 -2.58 -2.39 -1.58
-1.2 1.0 1.61 1.67 1.66 1.54 0.83 -0.1 -0.93 -1.57 -2.34 -2.68 -1.86 0.11 -6.77 -2.2 -1.57 -2.7 -1.47 -3.32 -1.33 -7.03 -0.98 -1.14 1.68 -1.87 1.26 1.2 -2.26 -1.92 -2.0 -0.86
Smo25407 (EDL2)
-0.48 -0.0 0.65 1.27 1.22 0.99 0.98 0.52 0.33 0.4 0.16 0.04 -0.24 -0.93 -1.43 -0.9 0.31 -0.24 -0.36 -8.68 -5.09 -7.18 0.52 0.47 -5.79 -0.73 -0.25 -0.07 -0.23 -0.31 -0.26 -0.1
-1.31 -0.01 0.68 0.83 0.56 0.45 0.78 0.54 0.21 0.11 -0.13 -0.31 0.19 -0.46 -1.64 -0.02 -0.71 -1.0 -0.59 -0.87 -0.69 -2.29 -0.03 -0.12 0.74 1.2 0.35 0.48 -0.69 -0.8 -0.9 -0.57
0.26 0.69 0.67 0.7 0.72 0.62 1.03 0.72 0.73 0.89 0.49 0.46 0.32 -0.15 -1.41 0.49 -1.38 -0.61 -0.15 -4.56 - -2.03 -0.25 -0.39 -3.53 0.34 -0.69 -0.99 -0.86 -0.8 -0.59 -0.33
-0.82 0.57 1.55 1.34 -1.18 -2.64 1.19 1.62 0.9 1.19 0.89 0.38 1.56 -0.82 -2.32 -3.0 -3.02 -2.04 -2.19 -5.0 -7.97 - -0.95 -0.89 -7.21 1.28 -1.72 -4.03 -1.35 -1.59 -0.02 0.25
-1.25 -0.32 0.62 1.12 1.1 1.11 1.36 0.62 0.21 0.29 -0.01 0.13 -1.36 -1.96 -0.44 0.33 -0.34 -1.18 -0.41 -1.58 -1.24 -1.15 -0.39 -0.75 -0.53 0.73 0.23 0.72 -0.44 -0.49 -2.5 -2.42
-1.81 -2.91 0.55 1.15 0.45 0.44 2.05 1.96 0.99 1.42 1.78 0.26 - - -0.97 -2.63 -2.79 -2.62 -1.79 - - - -1.06 - - 1.98 -1.54 0.47 -1.82 -2.77 - -
-0.05 1.01 1.02 0.85 0.57 0.18 0.88 0.2 -0.22 -0.38 -0.58 -0.41 0.08 -0.66 -0.93 0.39 -0.11 -0.3 0.23 -1.87 -3.01 -3.87 0.19 0.06 -2.62 0.83 0.62 0.77 -0.75 -0.56 -1.09 -0.91
Smo413715 (bZIP44)
-2.42 -0.49 1.4 2.11 1.83 1.07 0.64 0.52 -0.48 -0.93 -2.05 -2.15 -2.48 -4.55 -4.13 -1.61 0.05 -1.73 -0.19 -1.69 -1.66 -4.32 0.56 -0.29 -0.74 1.37 0.68 0.26 -0.57 -1.07 -0.81 -1.75
Smo414587 (TIFY8)
-0.47 0.0 0.36 0.61 0.76 0.59 0.37 0.12 -0.07 -0.24 -0.4 -0.65 0.28 -0.41 -0.19 0.53 -0.12 -1.04 0.03 -0.67 -0.04 -0.32 -0.25 -0.54 0.31 0.28 0.22 0.42 -0.62 -0.55 -0.28 -0.09
Smo421130 (ATRX)
0.05 -0.31 0.31 0.22 0.18 -0.06 0.93 0.52 0.67 0.62 0.68 0.54 2.26 -0.34 0.46 0.3 -1.74 -2.7 -0.2 - - - -1.39 -1.12 -2.3 0.84 0.59 0.36 -1.73 -1.57 -2.77 -2.09
-0.59 0.49 1.35 0.51 0.62 0.09 1.74 1.49 1.53 1.85 1.16 0.66 -0.65 -3.93 -3.85 -1.65 -1.78 -3.0 -2.9 - - - -0.35 -0.8 - -0.95 -1.54 -1.3 -0.96 -1.01 -0.28 -0.37
Smo431032 (DFB)
0.11 0.75 0.77 0.98 0.67 0.59 0.93 0.58 0.65 0.54 0.37 0.27 -0.1 -0.56 -0.16 -0.49 -0.28 -0.09 -0.85 - -5.87 -2.94 -0.29 -0.66 -1.09 0.06 0.53 0.62 -0.63 -0.63 -1.46 -1.96
-0.13 1.15 0.97 1.14 1.24 1.1 0.4 0.25 0.24 0.01 -0.43 -0.46 -0.24 0.71 -3.02 -1.62 -0.79 -1.02 -3.22 - -1.29 - -0.1 -0.94 1.62 -2.63 0.8 1.0 -1.52 -1.46 -2.65 -2.35
Smo438896 (EMB2769)
0.22 0.23 0.1 0.07 0.26 0.22 0.39 0.12 0.17 0.3 0.19 0.0 0.88 -0.3 -0.0 0.4 -0.31 -0.95 0.07 0.09 -1.86 -2.73 -0.25 -0.23 0.02 0.3 0.24 0.31 -0.43 -0.33 -0.45 -0.31
-0.95 0.61 1.12 1.18 0.66 0.2 1.22 0.88 0.44 0.44 -0.06 -0.33 0.17 -1.56 -1.41 0.3 -0.96 -0.79 0.25 -7.13 -4.1 - -0.44 -0.62 -4.02 0.76 -0.41 -0.48 -0.36 -0.02 -0.04 0.48
0.36 1.04 1.03 0.84 0.12 -0.24 0.81 0.83 0.88 1.28 0.97 1.09 0.33 -1.13 -1.69 -0.17 -2.09 -1.07 -0.97 -5.98 -3.24 -7.04 -0.36 -0.33 -4.27 0.07 -1.58 -1.85 -0.1 -0.25 -0.44 -0.08
0.79 0.9 0.5 0.45 1.29 0.35 1.47 0.96 1.14 1.39 1.26 0.78 -0.08 -0.95 -0.68 -0.57 -1.3 -2.56 -1.17 - -5.58 -6.38 -0.91 -0.73 - -0.17 -1.96 -0.49 -1.4 -1.34 -1.88 -1.3
Smo51483 (CRR22)
-1.3 0.1 1.23 1.73 1.47 1.21 1.29 -0.13 -1.18 -1.26 -1.35 -1.41 -0.92 -0.94 -0.36 -0.34 0.3 -0.53 -0.3 -9.15 -3.57 -6.78 0.87 0.52 -6.05 0.45 0.03 0.4 -1.23 -0.92 -0.58 -0.48
-0.67 -0.01 -0.22 -0.23 -0.12 -0.08 0.65 1.15 1.05 0.88 0.68 0.15 1.87 0.21 0.04 0.59 -1.25 -1.25 -1.24 -3.01 -4.37 -3.66 -1.3 -1.18 -0.62 -0.75 0.26 -0.1 -0.01 -0.11 -0.79 -0.32
0.26 0.26 -0.05 0.31 0.33 -0.13 0.16 0.12 0.48 1.21 0.61 0.98 1.92 -0.08 -0.65 0.43 -1.25 -3.55 -0.71 -5.0 -4.47 - -0.04 -0.11 -0.19 0.84 -0.48 -0.34 -1.06 -0.75 -1.6 -1.28
-0.71 0.67 1.34 1.07 0.09 -0.28 0.73 1.19 0.76 1.09 0.92 0.67 0.71 0.32 -3.42 -0.23 -2.61 -1.27 -0.73 - -5.87 - -0.66 0.2 -4.58 0.94 -0.6 -1.61 -2.2 -2.22 -0.25 -0.02
-1.12 0.05 0.57 1.13 1.49 1.07 0.27 0.17 -0.08 -0.08 -0.5 -1.11 -0.22 -0.12 -1.09 -0.34 -0.24 -1.26 -0.65 -2.14 -0.77 -3.0 -0.14 -0.77 0.88 -0.27 0.81 1.08 -0.94 -1.18 -0.59 0.01
-2.94 -0.44 0.34 0.19 -0.6 -0.9 2.49 1.66 0.82 1.4 0.75 0.34 0.88 0.01 -0.91 -1.7 -2.49 -1.96 -0.65 -0.28 -1.59 -2.0 -2.17 -2.13 -3.45 0.29 -1.24 -1.94 -1.12 -1.06 -0.02 -0.21
Smo74269 (PEX3-1)
-0.03 0.2 0.39 0.7 1.02 0.91 0.59 0.26 0.17 0.21 -0.1 -0.15 -0.3 -0.08 -0.74 -0.34 -0.08 -0.61 0.22 -0.96 -0.59 -1.63 0.05 -0.12 -2.15 -0.36 -0.2 0.24 -0.26 -0.29 -0.01 0.22
Smo80138 (VAMP711)
-1.35 -0.8 -0.14 0.31 0.19 0.14 0.45 0.77 0.42 0.43 0.08 -0.35 0.41 0.6 -0.54 0.37 -0.61 -1.04 -0.21 -0.68 -0.15 -3.27 0.04 0.05 0.81 0.7 -0.19 -0.36 -0.45 -0.58 -0.16 0.26
Smo80973 (HCS1)
0.11 0.2 0.4 0.37 0.72 0.49 0.22 0.32 0.21 0.22 -0.02 -0.26 1.25 -0.61 0.29 0.71 -0.38 -0.65 0.2 -6.41 -2.77 -0.85 -0.52 -0.3 0.2 -0.13 0.31 0.1 -0.43 -0.38 -1.04 -0.97
Smo83100 (OMT1)
-1.37 0.25 1.27 1.87 1.61 1.63 1.19 0.69 0.51 0.3 -0.22 -0.4 1.77 -3.21 -3.18 -1.61 -0.75 -1.93 -4.06 - -5.82 -9.18 -0.53 -1.42 -3.48 -1.49 -0.21 0.34 -0.82 -0.6 -2.18 -3.35
-0.72 -0.05 0.29 0.73 1.2 1.52 0.71 0.35 0.02 -0.27 -0.64 -0.74 -0.59 -0.12 -1.45 -0.29 -0.62 -0.79 -0.06 -1.47 -1.4 -3.38 0.01 -0.15 0.9 -0.11 0.61 0.77 -0.94 -0.88 -0.48 -0.17
-1.8 -1.05 0.34 0.89 0.65 0.43 1.33 1.36 0.85 0.53 -0.02 -0.68 0.77 0.36 -1.16 0.53 -0.67 -0.82 0.04 -2.82 -1.39 -2.16 -0.14 -0.36 -2.61 0.74 -0.69 -0.89 -0.7 -0.76 -0.42 -0.34
0.13 0.72 0.75 0.83 0.41 0.15 0.67 0.4 0.35 0.65 0.49 0.74 -0.23 -0.97 -0.08 -0.12 -0.88 -0.71 -0.51 -0.69 0.05 -2.07 -0.74 -0.55 -1.2 0.33 -0.9 -0.76 -0.24 -0.26 -0.28 -0.08
Smo92554 (RBOHF)
-0.44 0.44 0.86 1.1 1.09 0.91 1.0 0.75 0.89 0.66 0.48 0.1 0.75 -0.15 -3.97 -0.46 0.22 -0.65 -0.69 -6.3 -3.01 -6.3 -0.71 -1.02 -2.37 -0.39 -0.21 0.16 -0.67 -0.54 -0.84 -1.03
Smo96116 (OMT1)
-2.29 -0.91 0.32 1.2 1.68 1.89 1.33 0.52 -0.18 -0.69 -1.31 -2.47 2.85 -1.22 -3.38 0.56 -3.02 -5.1 -1.94 -8.77 -5.64 -4.06 -1.02 -1.71 -0.06 -0.0 -0.47 -0.27 -2.49 -1.45 -3.3 -3.44
Smo99462 (MYB70)
-0.4 0.38 0.8 0.7 -0.19 0.21 1.39 0.64 0.17 0.44 0.43 0.55 -0.0 -0.58 -1.06 0.81 -1.09 -0.32 0.16 - - - -1.35 -1.28 - 0.77 -0.14 -0.17 0.5 0.77 -0.63 -0.47

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.