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  5. Smo170330

Smo170330


Description : Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana


Gene families : OG0000505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo170330
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00115620 evm_27.TU.AmTr_v1... Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00048p00146310 evm_27.TU.AmTr_v1... Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00070p00145350 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G08350 No alias Endomembrane protein 70 protein family 0.06 OrthoFinder output from all 47 species
AT1G10950 TMN1, AtTMN1 transmembrane nine 1 0.08 OrthoFinder output from all 47 species
AT1G14670 No alias Endomembrane protein 70 protein family 0.06 OrthoFinder output from all 47 species
AT2G01970 No alias Endomembrane protein 70 protein family 0.02 OrthoFinder output from all 47 species
AT5G37310 No alias Endomembrane protein 70 protein family 0.04 OrthoFinder output from all 47 species
Adi_g003344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079622 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06723 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03157 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18477 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g27302 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03806 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0144.g051538 TMN1, AtTMN1 not classified & original description: CDS=1-1746 0.03 OrthoFinder output from all 47 species
Azfi_s0428.g069304 No alias not classified & original description: CDS=237-1763 0.03 OrthoFinder output from all 47 species
Azfi_s0509.g074704 TMN1, AtTMN1 not classified & original description: CDS=1-1740 0.1 OrthoFinder output from all 47 species
Azfi_s2385.g111052 No alias not classified & original description: CDS=238-1536 0.02 OrthoFinder output from all 47 species
Ceric.01G022200.1 Ceric.01G022200 not classified & original description: pacid=50590564... 0.03 OrthoFinder output from all 47 species
Ceric.22G054000.1 Ceric.22G054000 not classified & original description: pacid=50613875... 0.04 OrthoFinder output from all 47 species
Ceric.26G022100.1 TMN1, AtTMN1,... not classified & original description: pacid=50599543... 0.03 OrthoFinder output from all 47 species
Ceric.34G054800.1 TMN1, AtTMN1,... not classified & original description: pacid=50624162... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.14 No alias Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.15 No alias Transmembrane 9 superfamily member 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.24 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre01.g024350 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cre16.g675958 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Dac_g03775 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10047 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10048 TMN1, AtTMN1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g03386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31825 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011574001 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_02686 No alias Transmembrane 9 superfamily member 3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_07212 TMN1, AtTMN1 Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os02g34690.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
LOC_Os03g13380.1 LOC_Os03g13380 Transmembrane 9 superfamily member 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os11g07910.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
LOC_Os12g07670.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g05429 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07740 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05549 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_103022g0010 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10431450g0020 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g16980.1 TMN1, AtTMN1 Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g06160.1 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g07580.1 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Nbi_g02238 TMN1, AtTMN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06736 TMN1, AtTMN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g08253 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19351 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g45829 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10399 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10846 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g103930.3.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc04g014570.3.1 Solyc04g014570 Transmembrane 9 superfamily member 3 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Solyc05g054040.4.1 Solyc05g054040 Transmembrane 9 superfamily member 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g011910.2.1 Solyc11g011910 Transmembrane 9 superfamily member 3 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc11g022540.3.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Spa_g17201 TMN1, AtTMN1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g22300 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40885 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47696 TMN1, AtTMN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50972 TMN1, AtTMN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g14792 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000978_P002 Zm00001e000978 Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e008994_P001 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014799_P002 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e038626_P002 Zm00001e038626 Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Zm00001e039502_P001 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR004240 EMP70 59 547
No external refs found!