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  5. Smo170139

Smo170139


Description : ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana


Gene families : OG0001881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001881_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo170139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00202840 evm_27.TU.AmTr_v1... DNA damage response.BRCA1–BARD1 DNA-damage response... 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00084950 evm_27.TU.AmTr_v1... ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
AT3G15120 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
Adi_g060029 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Aev_g10813 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ala_g09940 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Ala_g18310 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Als_g01976 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Aob_g33764 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010210 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Cba_g14633 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ehy_g11671 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g14380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014274001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.05 OrthoFinder output from all 47 species
Gb_11471 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 OrthoFinder output from all 47 species
LOC_Os01g47800.1 LOC_Os01g47800 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g11424 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Lfl_g18945 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
MA_10425878g0020 No alias ATPase family AAA domain-containing protein At1g05910... 0.04 OrthoFinder output from all 47 species
MA_10432357g0010 No alias ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
Mp2g00420.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.06 OrthoFinder output from all 47 species
Ore_g33221 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.07 OrthoFinder output from all 47 species
Pir_g03116 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Ppi_g01388 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g49222 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000723 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023552 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Solyc07g062770.2.1 Solyc07g062770 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.05 OrthoFinder output from all 47 species
Spa_g26513 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e034695_P003 Zm00001e034695 ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 120 254
No external refs found!