1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo166496

Smo166496 (SHM4)


Aliases : SHM4

Description : Amino acid metabolism.biosynthesis.serine family.glycine.serine hydroxymethyltransferase


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo166496
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00262120 SHM4,... Amino acid metabolism.biosynthesis.serine... 0.09 OrthoFinder output from all 47 species
AT4G13930 SHM4 serine hydroxymethyltransferase 4 0.06 OrthoFinder output from all 47 species
Aev_g10440 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Ala_g06665 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ala_g06666 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Als_g30419 SHM2 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Aob_g05945 AtSHMT3, SHM3 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aop_g08717 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene38484.t1 SHM7, Aspi01Gene38484 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene54986.t1 SHM4, Aspi01Gene54986 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene72159.t1 SHM4, Aspi01Gene72159 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cba_g07101 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Ceric.16G071800.1 SHM4, Ceric.16G071800 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Ceric.37G043000.1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cre06.g293950 SHM4 Amino acid metabolism.biosynthesis.serine... 0.05 OrthoFinder output from all 47 species
Dac_g02790 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Dcu_g23927 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
GSVIVT01003852001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.03 OrthoFinder output from all 47 species
GSVIVT01009226001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.09 OrthoFinder output from all 47 species
LOC_Os11g26860.1 SHM4, LOC_Os11g26860 Serine hydroxymethyltransferase 4 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Len_g24771 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Lfl_g01520 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
MA_11357g0010 SHM4 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.05 OrthoFinder output from all 47 species
Mp4g11800.1 SHM7 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species
Msp_g00555 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Nbi_g04285 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Ore_g03183 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ore_g20456 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Ppi_g13186 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025814 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Solyc05g053810.3.1 SHM4, Solyc05g053810 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.09 OrthoFinder output from all 47 species
Spa_g04332 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.11 OrthoFinder output from all 47 species
Spa_g30099 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Tin_g12386 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Zm00001e021483_P001 SHM4, Zm00001e021483 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 13 411
No external refs found!