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  5. Smo160340

Smo160340


Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.beta subunit


Gene families : OG0002649 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo160340

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00238440 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
AT4G31480 No alias Coatomer, beta subunit 0.06 OrthoFinder output from all 47 species
AT4G31490 No alias Coatomer, beta subunit 0.05 OrthoFinder output from all 47 species
Adi_g059781 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
Aev_g08571 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
Ala_g12957 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
Als_g16565 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
Als_g27352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50512 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Aob_g05342 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Aop_g08029 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0279.g062259 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.06 OrthoFinder output from all 47 species
Cba_g01302 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G093900.1 Ceric.04G093900 subunit beta of cargo adaptor F-subcomplex & original... 0.06 OrthoFinder output from all 47 species
Ceric.24G063400.1 Ceric.24G063400 subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.156 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Cre04.g217921 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Dcu_g03132 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.06 OrthoFinder output from all 47 species
Dde_g09656 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01035511001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
Gb_03760 No alias subunit beta of cargo adaptor F-subcomplex 0.04 OrthoFinder output from all 47 species
Gb_23100 No alias subunit beta of cargo adaptor F-subcomplex 0.06 OrthoFinder output from all 47 species
LOC_Os01g17430.1 LOC_Os01g17430 subunit beta of cargo adaptor F-subcomplex 0.03 OrthoFinder output from all 47 species
LOC_Os11g07280.1 LOC_Os11g07280 subunit beta of cargo adaptor F-subcomplex 0.05 OrthoFinder output from all 47 species
Len_g12104 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Lfl_g04220 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
MA_10432097g0010 No alias Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_10432097g0020 No alias subunit beta of cargo adaptor F-subcomplex 0.02 OrthoFinder output from all 47 species
Mp5g08450.1 No alias subunit beta of cargo adaptor F-subcomplex 0.05 OrthoFinder output from all 47 species
Msp_g15814 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.06 OrthoFinder output from all 47 species
Nbi_g02428 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
Ore_g05742 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Ore_g42071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02305 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
Pnu_g33812 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g17439 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
Sam_g19453 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
Solyc01g007150.3.1 Solyc01g007150 subunit beta of cargo adaptor F-subcomplex 0.03 OrthoFinder output from all 47 species
Solyc10g081920.2.1 Solyc10g081920 subunit beta of cargo adaptor F-subcomplex 0.07 OrthoFinder output from all 47 species
Spa_g12851 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.04 OrthoFinder output from all 47 species
Tin_g04740 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.05 OrthoFinder output from all 47 species
Zm00001e009041_P001 Zm00001e009041 subunit beta of cargo adaptor F-subcomplex 0.06 OrthoFinder output from all 47 species
Zm00001e017416_P001 Zm00001e017416 subunit beta of cargo adaptor F-subcomplex 0.08 OrthoFinder output from all 47 species
Zm00001e025465_P001 Zm00001e025465 subunit beta of cargo adaptor F-subcomplex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR029446 COPB1_appendage_platform_dom 827 954
No external refs found!