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  5. Smo149765

Smo149765


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP0 component


Gene families : OG0002053 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002053_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo149765
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00231170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AT3G09200 No alias Ribosomal protein L10 family protein 0.09 OrthoFinder output from all 47 species
AT3G11250 No alias Ribosomal protein L10 family protein 0.07 OrthoFinder output from all 47 species
Ala_g01443 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g13520 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0024.g020356 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.18G048600.1 Ceric.18G048600 component *(uL10) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.69 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre12.g520500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Dac_g01446 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g24985 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01016313001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01032857001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Gb_29821 No alias 60S acidic ribosomal protein P0 OS=Glycine max... 0.03 OrthoFinder output from all 47 species
LOC_Os08g03640.1 LOC_Os08g03640 component RPP0 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Len_g16154 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10433058g0020 No alias component RPP0 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Mp1g07120.1 No alias component RPP0 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Ore_g06033 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g63936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c11_3700V3.1 Pp3c11_3700 Ribosomal protein L10 family protein 0.06 OrthoFinder output from all 47 species
Pp3c1_8280V3.1 Pp3c1_8280 Ribosomal protein L10 family protein 0.08 OrthoFinder output from all 47 species
Ppi_g29825 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005433 No alias component *(cpTatC) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008845 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g06149 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g06150 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g09753 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g09883 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g12721 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc05g054580.3.1 Solyc05g054580 component RPP0 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Spa_g56101 No alias component *(uL10) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e021786_P001 Zm00001e021786 component RPP0 of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!