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  5. Smo149618

Smo149618


No description available


Gene families : OG0003288 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003288_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo149618
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AT5G51410 No alias LUC7 N_terminus domain-containing protein 0.05 OrthoFinder output from all 47 species
Azfi_s0241.g059752 No alias pre-mRNA-processing protein *(LUC7) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os07g27300.2 LOC_Os07g27300 pre-mRNA-processing protein (LUC7) 0.04 OrthoFinder output from all 47 species
Mp2g06220.1 No alias pre-mRNA-processing protein (LUC7) 0.05 OrthoFinder output from all 47 species
Mp8g04110.1 No alias pre-mRNA-processing protein (LUC7) 0.02 OrthoFinder output from all 47 species
Ore_g35477 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006376 mRNA splice site selection IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005929 cilium IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018199 peptidyl-glutamine modification IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
CC GO:0030173 obsolete integral component of Golgi membrane IEP HCCA
CC GO:0031514 motile cilium IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004882 Luc7-rel 4 227
No external refs found!