Smo145504 (TOP1BETA, TOP1)

Aliases : TOP1BETA, TOP1

Description : Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase

Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo145504
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00193620	MGO1, TOP1,...	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.03	OrthoFinder output from all 47 species
AT5G55300	MGO1, TOP1, TOP1ALPHA	DNA topoisomerase I alpha	0.07	OrthoFinder output from all 47 species
Aev_g03385	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g08299	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene39560.t1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene51540.t1	MGO1, TOP1,...	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.22G051300.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.31G042500.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.05	OrthoFinder output from all 47 species
Dcu_g14421	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g04011	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01020301001	MGO1, TOP1, TOP1ALPHA	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.04	OrthoFinder output from all 47 species
Gb_13084	TOP1BETA, TOP1	DNA topoisomerase (TOP1)	0.02	OrthoFinder output from all 47 species
Lfl_g04991	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.08	OrthoFinder output from all 47 species
MA_120434g0010	TOP1BETA, TOP1	DNA topoisomerase (TOP1)	0.02	OrthoFinder output from all 47 species
Mp6g05370.1	TOP1BETA, TOP1	DNA topoisomerase (TOP1)	0.04	OrthoFinder output from all 47 species
Nbi_g05911	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g41412	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g03945	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g049720.4.1	MGO1, TOP1,...	DNA topoisomerase (TOP1)	0.06	OrthoFinder output from all 47 species
Spa_g18323	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g27008	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0006376	mRNA splice site selection	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025834	TopoI_C_dom	445	514

External Links

No external refs found!

Smo145504 (TOP1BETA, TOP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation